Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01988 ATGGCGCCGAAGCAGGGAAGATTGAGGGGAAGCAGAAACCCCGAATTGATCAGGGGAATTGGAAAATATTCAAGGGGGCAGATGTACCACAAGAGGGGTCTCTGGGCTATCAAGGCTAAGAACGGCGGTGCTTTCCCTCGCCACGATCCCAAGCCTAAGCCTGAAGCTCCCGCTGAGAAGCCACCCAAGTTCTACCCCGCCGATGATGTCAAGAAGCCACTTGTCAACAAGCACAAACCCAAACCCACTAAGCTAAGGGCTAGCATTACTCCTGGGACAGTGCTGATTCTTCTTGCCGGCAGATTTAAGGGAAAGAGAGTAGTGTTTCTCAAGCAGCTTCCTTCTGGGTTGCTCCTTGTAACCGGTAATTCCTTGTACCAATCTTCATGTTTCTTTCTCACCATTTCAGGTCCTTTCAAGATCAATGGAGTTCCTTTGAGACGTGTGAATCAGTCATATGTTATTGCTACGTCAACCAAAGTAGAGGTTTCTGCTGTGAATGTTGATAAATTTGATGACAAGTACTTCTCAAAGGAAGTGCAGAAAAAGATTAAGAAGGGAGAAAGCGAGTTCTTTGAGGCAGAGAAGGAGGACAAAAATGTACTCCCCCAGGAGAAGAAAGATGACCAAAAAACTGTGGATTCTGCCTTGATAAAAGCCATAGAAAGTGTTCCAGACTTGAAGGCTTATCTAGGTGCCAGGTTTTCCTTGAAGGCAGGCATGAAGCCTCATGAGCTAGTCTTCTAG 747 0.4659 MAPKQGRLRGSRNPELIRGIGKYSRGQMYHKRGLWAIKAKNGGAFPRHDPKPKPEAPAEKPPKFYPADDVKKPLVNKHKPKPTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGNSLYQSSCFFLTISGPFKINGVPLRRVNQSYVIATSTKVEVSAVNVDKFDDKYFSKEVQKKIKKGESEFFEAEKEDKNVLPQEKKDDQKTVDSALIKAIESVPDLKAYLGARFSLKAGMKPHELVF. 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01988 248 Pfam Ribosomal protein L6, N-terminal domain 3 61 IPR005568 GO:0003735|GO:0005840|GO:0006412
Seca3g01988 248 MobiDBLite consensus disorder prediction 40 83 - -
Seca3g01988 248 Pfam Ribosomal protein L6e 141 248 IPR000915 GO:0003735|GO:0005840|GO:0006412
Seca3g01988 248 MobiDBLite consensus disorder prediction 44 76 - -
Seca3g01988 248 SUPERFAMILY Translation proteins SH3-like domain 87 193 IPR008991 -
Seca3g01988 248 CDD KOW_RPL6 81 248 IPR041997 -
Seca3g01988 248 ProSitePatterns Ribosomal protein L6e signature. 142 160 IPR000915 GO:0003735|GO:0005840|GO:0006412
Seca3g01988 248 PANTHER 60S RIBOSOMAL PROTEIN L6 132 248 IPR000915 GO:0003735|GO:0005840|GO:0006412
Seca3g01988 248 Gene3D - 87 129 IPR014722 -
Seca3g01988 248 Gene3D - 130 192 IPR014722 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01988 Seca-Chr3 34977396 34980504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01988 1 248 Cytoplasmic Ribosomal Protein Gene Family AT1G74050 73.790 2.64e-115 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01988 K02934 - cit:102608733 397.127