Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01987 ATGGCGCCGAAGCAGGGAAGATTGAGGGGAAGCAGAAACCCCGAATTGATCAGGGGAATTGGAAAATATTCAAGGGGGCAGATGTACCACAAGAGGGGTCTCTGGGCTATCAAGGCTAAGAACGGCGGTGCTTTCCCTCGCCACGATCCCAAGCCTAAGCCTGAAGCTCCCGCTGAGAAGCCACCCAAGTTCTACCCCGCCGATGATGTCAAGAAGCCACTTGTCAACAAGCACAAACCCAAACCCACTAAGCTAAGGGCTAGCATTACTCCTGGGACAGTGCTGATTCTTCTTGCCGGCAGATTTAAGGGAAAGAGAGTAGTGTTTCTCAAGCAGCTTCCTTCTGGGTTGCTCCTTGTAACCGGTCCTTTCAAGATCAATGGAGTTCCTTTGAGACGTGTGAATCAGTCATATGTTATTGCCACGTCCACCAAAGTAGATGTTTCTGCTGTGAATGTTGATAAATTTGATGACAAGTACTTCTCAAAGGAAGTCCAGAAAAAGAAAAAGAAGGGAGAAAGTGAGTTCTTTGAGGCAGAGAAGGAGGACAAAAATGTACTCCCCCAGGAGAAGAAAGATGACCAAAAAACTGTGGATTCTGCCTTGATAAAGGCCATGGAGAGTGTTCCTGACTTGAAAGCTTATCTAGGTGCCAGGTTTTCCTTGAAGGCAGGCATGAAGCCTCATGAGCTAATGGCAAGGACTCAAAAGAACAAGGCTACTGCTCATCATTTGGGCTTGTTGAAGGCTAAACTTGCAAAGCTGCGGAGGGAACTCCTTACACCTACATCAAAAGGAGCTGGAGGTGCTGGTGAAGGTTTTGATGTTACCAAAAGTGGGGATTCAAGAGTTGGTCTTGTGGGTTTCCCTTCAGTTGGCAAATCTACTCTTCTGAATAAGTTGACTGGGACATTTTCAGAGGTTGCTTCCTATGAGTTTACTACCTTAACTTGCATCCCAGGTGTGATCACATATCGTGGAGCCAAAATTCAGTTGCTGGATCTCCCTGGAATTATTGAGGGTGCTAAGGATGGAAAAGGTAGAGGAAGGCAGGTTATTAGTACTGCAAGGACATGCAATTGCATTTTAATTGTTCTTGATGCAATAAAGCCAATAACTCATAAGCGTCTTATAGAAAAAGAGCTAGAGGGATTTGGTATAAGGTTAAACAAAGAGCCACCAAACCTGACTTTTAGGAAGAAAGATAAGGGTGGAATCAATCTCACCTCAACTGTCACCACTACACATCTGGATCTTGAGACTGTGAAGGCTATATGTAGTGAGTACAGAATGCACAATGCAGATATTACTCTCAGGTATGATGCCACTGCCGATGACCTTATAGATGTCATTGAAGGCAGTAGAGTATATATGCCTTGCATCTATGTTGTAAACAAGATTGATCAGATCACACTTGAGGAACTGGAGATCCTGGATAAGCTACCTCATTACTGCCCAATCAGTGCACACTTGGAGTGGAACCTTGATGGGCTTCTGGATAAAATTTGGGAATATCTCGATTTAACTCGTATTTACACTAAACCTAAAGGGATGAATCCTGACTATGAAGACCCTGTAATATTGTCATCTAAGAAGAGGACAGTTGAAGATTTCTGCAATCGCATTCACAAGGACATGGTTAAACAGTTTAAGTATGCTCTTGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAAGGAGCATGAACTTGAAGATGAAGATGTCGTTCAGATTATCAAGAAAGTATAA 1758 0.438 MAPKQGRLRGSRNPELIRGIGKYSRGQMYHKRGLWAIKAKNGGAFPRHDPKPKPEAPAEKPPKFYPADDVKKPLVNKHKPKPTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIATSTKVDVSAVNVDKFDDKYFSKEVQKKKKKGESEFFEAEKEDKNVLPQEKKDDQKTVDSALIKAMESVPDLKAYLGARFSLKAGMKPHELMARTQKNKATAHHLGLLKAKLAKLRRELLTPTSKGAGGAGEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKEPPNLTFRKKDKGGINLTSTVTTTHLDLETVKAICSEYRMHNADITLRYDATADDLIDVIEGSRVYMPCIYVVNKIDQITLEELEILDKLPHYCPISAHLEWNLDGLLDKIWEYLDLTRIYTKPKGMNPDYEDPVILSSKKRTVEDFCNRIHKDMVKQFKYALVWGSSAKHKPQRVGKEHELEDEDVVQIIKKV. 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01987 585 Gene3D - 500 585 IPR012675 -
Seca3g01987 585 MobiDBLite consensus disorder prediction 174 193 - -
Seca3g01987 585 SUPERFAMILY TGS-like 530 583 IPR012676 -
Seca3g01987 585 Gene3D - 348 456 - -
Seca3g01987 585 Gene3D - 228 302 - -
Seca3g01987 585 FunFam 60S ribosomal protein L6 87 171 - -
Seca3g01987 585 Gene3D - 87 172 IPR014722 -
Seca3g01987 585 MobiDBLite consensus disorder prediction 44 76 - -
Seca3g01987 585 Pfam Ribosomal protein L6e 126 231 IPR000915 GO:0003735|GO:0005840|GO:0006412
Seca3g01987 585 MobiDBLite consensus disorder prediction 40 84 - -
Seca3g01987 585 ProSitePatterns Ribosomal protein L6e signature. 127 145 IPR000915 GO:0003735|GO:0005840|GO:0006412
Seca3g01987 585 FunFam Developmentally-regulated GTP-binding protein 1 500 584 - -
Seca3g01987 585 Pfam Ribosomal protein L6, N-terminal domain 3 61 IPR005568 GO:0003735|GO:0005840|GO:0006412
Seca3g01987 585 CDD TGS_DRG1 505 584 - -
Seca3g01987 585 FunFam Putative GTP-binding protein 1 270 408 - -
Seca3g01987 585 CDD DRG 282 514 IPR045001 GO:0003924|GO:0005525
Seca3g01987 585 PRINTS GTP1/OBG GTP-binding protein family signature 284 304 IPR006073 GO:0005525
Seca3g01987 585 PRINTS GTP1/OBG GTP-binding protein family signature 349 367 IPR006073 GO:0005525
Seca3g01987 585 PRINTS GTP1/OBG GTP-binding protein family signature 305 323 IPR006073 GO:0005525
Seca3g01987 585 PRINTS GTP1/OBG GTP-binding protein family signature 332 347 IPR006073 GO:0005525
Seca3g01987 585 PANTHER DEVELOPMENTALLY-REGULATED GTP-BINDING PROTEIN 2 230 584 IPR045001 GO:0003924|GO:0005525
Seca3g01987 585 Pfam TGS domain 510 583 IPR004095 -
Seca3g01987 585 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 283 530 IPR027417 -
Seca3g01987 585 ProSitePatterns GTP1/OBG family signature. 334 347 IPR006074 GO:0005525
Seca3g01987 585 SUPERFAMILY Translation proteins SH3-like domain 87 177 IPR008991 -
Seca3g01987 585 ProSiteProfiles TGS domain profile. 507 583 IPR004095 -
Seca3g01987 585 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 282 507 IPR031167 GO:0005525
Seca3g01987 585 NCBIfam small GTP-binding protein domain 281 433 IPR005225 GO:0005525
Seca3g01987 585 Pfam 50S ribosome-binding GTPase 283 375 IPR006073 GO:0005525
Seca3g01987 585 Pfam C-terminal region of MMR_HSR1 domain 403 508 IPR031662 -
Seca3g01987 585 CDD KOW_RPL6 81 231 IPR041997 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01987 Seca-Chr3 34937107 34961918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01987 1 232 Cytoplasmic Ribosomal Protein Gene Family AT1G74050 78.448 2.57e-113 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01987 K06944 - gmx:100796064 677.167