Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01983 ATGGAGGACTGTTACTTTGTAAACCCTAATATTCCTAACCCTTATAATTACTCTCACTCTCCTCCTCCTTCTTCTGACTTCATTTTATCTGATTATCTCATGCTCGATGATCATCAAGAGTCTTGGTCACATAGCACGGAAACTGAATCATCAGAGAAAGCAGCATCTAGTGATGCTACTCATCATGGATTAATTGGTGATGCTGCAATTACCTCTTCCAACAGTAATAACATAAAATGCAAAAGTAGTGGGACTAAGCGAAACAATGGAGAAATGAGCGGAAGGATCACGTTTAGAACCAGATCGCAGCTTGAGATTATGGATGATGGATACAAATGGAGGAAATACGGGAAGAAGTCAGTGAAGAACAGTCCTAATCCAAGGAACTACTACAAGTGTTCGAGTGAAGGATGTGGTGTGAAGAAGAGAGTGGAAAGGGATAGGGAAGACTGGAGCTACGTGTTAACAAGTTATGAAGGTGTCCACAATCATGAGAGCCCCTACTACGCCCAAATGCATTCTAATATGACATTATTATGA 540 0.4074 MEDCYFVNPNIPNPYNYSHSPPPSSDFILSDYLMLDDHQESWSHSTETESSEKAASSDATHHGLIGDAAITSSNSNNIKCKSSGTKRNNGEMSGRITFRTRSQLEIMDDGYKWRKYGKKSVKNSPNPRNYYKCSSEGCGVKKRVERDREDWSYVLTSYEGVHNHESPYYAQMHSNMTLL. 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01983 179 ProSiteProfiles WRKY domain profile. 102 167 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g01983 179 Gene3D WRKY domain 94 160 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca3g01983 179 SMART WRKY_cls 107 166 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g01983 179 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 19 168 IPR044810 GO:0003700
Seca3g01983 179 SUPERFAMILY WRKY DNA-binding domain 99 167 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca3g01983 179 FunFam WRKY transcription factor 57 93 167 - -
Seca3g01983 179 Pfam WRKY DNA -binding domain 108 165 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g01983 179 MobiDBLite consensus disorder prediction 40 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01983 Seca-Chr3 34803632 34805459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01983 45 172 WRKY Transcription Factor Family AT5G64810 53.435 9.01e-40 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca3g01983 WRKY 4e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01983 - - gmx:100127396 201.445