Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01975 ATGATGTCTCAAAACGTGTTTGAAGAGGAAGATCAGATGGGGTTCCTTCCTTTCCCTGCAAACCTCACCTTCCCAAGATCCATCAGTGCAATAGCTCCTTCTTCACTTTCATCTGAACCACCTGCTTCTACAACAAATTTTGCAGAAACCCTACTCTCAACTAATGCTCTTCAGAAACCACAACAAGATCTCACTTCTACTTTCGGTGGAGGAGGTCAACTCCTTTCCTTGAACAGATCCAGATCAGCAAATTCATGGGCATGGGGAGAGGTAAGTGATTGCTTGATGGGTAAGAGAAGTGCAGGAGGAGATGGTGATCATCATCATCATCTTGGTGTTTCAGCCATGAGGATGAAGAAAATGAAGGGAAGAAGGAAGGTGAGGGAGCCAAGGTTTTGCTTCAAGACTATGAGTGATGTGGATGTGTTGGATGATGGCTACAAGTGGAGGAAGTACGGACAGAAAGTGGTGAAGAACACACAGCATCCAAGAAGCTACTACCGTTGCACCCAAGATAATTGTCGAGTAAAGAAACGTGTGGAGCGGTTGGCTGAGGATCCAAGGATGGTGATAACCACATATGAAGGAAGACATGTCCACTCTCCATCCAATGAACTTGATGAAGACTCACAATCTCCATCTCAACTTACTAATTTCTTCTGGTAG 666 0.4474 MMSQNVFEEEDQMGFLPFPANLTFPRSISAIAPSSLSSEPPASTTNFAETLLSTNALQKPQQDLTSTFGGGGQLLSLNRSRSANSWAWGEVSDCLMGKRSAGGDGDHHHHLGVSAMRMKKMKGRRKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSPSNELDEDSQSPSQLTNFFW. 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01975 221 Gene3D WRKY domain 130 196 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca3g01975 221 MobiDBLite consensus disorder prediction 206 221 - -
Seca3g01975 221 MobiDBLite consensus disorder prediction 197 221 - -
Seca3g01975 221 ProSiteProfiles WRKY domain profile. 138 203 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g01975 221 Pfam WRKY DNA -binding domain 144 200 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g01975 221 SMART WRKY_cls 143 202 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g01975 221 FunFam WRKY transcription factor 57 129 203 - -
Seca3g01975 221 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 85 205 IPR044810 GO:0003700
Seca3g01975 221 SUPERFAMILY WRKY DNA-binding domain 135 202 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01975 Seca-Chr3 34733099 34735683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01975 33 221 WRKY Transcription Factor Family AT4G39410 51.883 1.30e-67 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca3g01975 WRKY 9e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01975 - - gmx:100127389 306.605