Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01974 ATGAAATCCCTGTACAGCAGCAGCAAGTCTTTCTCGCTCGCGTTCAAGCTCTTGCTCTTGCTCCCTCTGTTTCTTCCATGCTGGTGTGCTGCCTCGCCTTCCAGAGACCCCACAGAGCAGCTGATCAACTTCAAAGCTACTCTCCCGAACCCAAACCTTCTCCCGAACTGGCTTCCAAACCAAAACCCATGTTCATTCACGGGGGTTACCTGCAACCAAACCATGGTCACTTCCATAGACCTCACCAACTTAGCCCTAAACACAAACCTCACCATCGTCGCAACCTACCTTCTCACCCTCGACCACCTCCAAGTCCTCACACTCAAATCCACCAACCTCACTGCTTCCGCCATTTCCGTTTCCCACAGTGTCAAGTGCTCCTCCTCACTCACCACCGTAGATCTATCCCAAAACATCTTGTCTGGATCCTTTTCCACCTTCTCCTTTCTTGCTTCATGCTCCAACCTCCAATCCCTCAACCTCTCCAACAACCTTCTCGAGTTCGATTCACCGCGTTGGAGTTTCCCTTCTAGCCTCCAAGTCTTGGACCTTTCATACAACAAGTTTACAGGTCCCAGCGTTTTCCCTTGGGTCCTGACCCCTGGCTTGCAGCACTTGGCTCTCAAAGGAAACAAAATCACCGGCGAAATCGACTTCTCCGGCACCAGTCTCCGGTATCTGGACCTTTCCTCCAACAACTTCTCCGTCTCCATTCCTTCCTTCGGTGAGTGTTCTGCACTTCAACACCTCGACCTCTCCACCAACAAATACTTCGGCGACATTGCCCGCACCATCTCCCCTTGCAAAAACCTCATCCACCTCAACCTCTCCGGTAACCAGTTCTCCGGTACGGTTCCATTCCTCCCCTCCGGTTCCCTGCAGTTCCTCTACCTCGCCGCAAATCACTTCCATGGCCAGATTCCGAAGAGCCTCGCTGACCTCTGCTCGACTCTGGTAGAACTCGATCTCTCCTCCAACAACCTAACCGGCGTCGTACCCGGCGAGTTAGGCGCGTGTTCCACCTTGGAATCCTTCGACATCTCTAGCAACAAGTTCACCGGTGCGTTGCCGGTGGAGGTGTTCACGGAGATGAGTAGCCTGAGAGACCTGGCGGTGTCGTTCAACGAATTCGTTGGGACCCTTCCGGTGTCTCTGGTTTCGAAGCTGCTGAGTTTGGAATCGCTGGATCTGAGCTCGAACAACTTGAGCGGGCCAATCCCTAGTGGACTGTGTGAAGATCCCAGGAATAATTTGAAGGAACTATACCTACAGAATAACCGCTTCACGGGTTTTATTCCACCCACGCTTAGCAACTGTTCTCACCTCGTTGCCTTGGACTTGAGCTTCAACTTCCTCGAGGGGACTATCCCTCCGAGTTTAGGGTCACTTTCCAGGTTGCGTGATTTGATCATGTGGCTCAACAAGCTCCACGGGGAGATTCCCCAAGAGCTGAGTCAGATGCAGAGCCTCGAGAATTTGATCCTGGACTTCAACGAGTTGAGTGGGAGCATTCCCTCTGGGCTTATGAATTGCACTAAGCTCAATTGGATCTCCCTCTCTAACAACAGGCTGAGTGGTGAGATTCCAGCGTGGATTGGGAAGCTTTCCAACCTGGCAATATTGAAGCTTAGCAATAACTCCTTCTCCGGGAAGATTCCTCCGGAGCTTGGGGATTGTCCTAGCTTGATATGGTTGGATCTGAATACCAATTCGCTGAGTGGGCCTATCCCTCCTGTGTTGTTCAAGCAATCAGGGAAGATCGCGGTTAATTTCATTCGCGGGAAGACATATGTGTATATAAAGAATGATGGTAGCAGGGAATGCCATGGTGCTGGGAACTTGCTGGAATTTGCAGGGATCAGTCAGCAGCAGTTGAATAGGATTTCAACCAGGAACCCTTGCAATTTCACCAGAGTGTATGGAGGTAAGCTGCAACCAACGTTTAACCATAATGGTTCCATGATCTTTTTGGATATCTCCCACAACATGTTGTCTGGTACCATTCCTAAGGAAATTGGGGAAATGTACTATTTGTACATTTTGAATTTGGGTCACAATAACATATCTGGAGACATACCTCAAGAGCTTGGCAGGATAAAGAACCTTAACATACTTGATCTCTCCAACAATAGACTCCAAGGCCCAATTCCACAAGCCTTGACGGGTCTATCCTTGCTCACTGAGTTGGACTTGTCGAACAACTATCTCTCTGGAATGATTCCTGAATCCGGGCAATTTGATACATTTTCAGCAAGCAGGTTCCAGAACAATTCTGGTCTTTGTGGGGTTCCTCTTCCTCCGTGTGGAGTGGTTTCAGGAACCAGTGCAGATGCTCAAAACCAGAAGGCTCATAAGAATCATGCATCTCTTGCGGGGAGTGTGGCCATGGGATTGTTGTTCTCTGTATTCTGCATCTTTGGTTTGATCATAGTTGCTATTGAGACCAGAAAGAGGAGGAAGAAGAAGGAGGCTGCTATTGATGGCTACATTGACGGCGGAAATTCTCACTCGGGTACGGCCAATGTCAGCTGGAAGTTGACTAGTGCCCGTGAAGCACTGAGCATAAACCTTGCAACGTTTGAGAAGCCCCTCAGGAAGCTTACTTTTGCTGATCTTCTTGAAGCAACCAATGGCTTTCACAATGACAGTCTTATTGGTTCAGGCGGTTTTGGGGACGTTTACAAGGCTCAGTTGAAGGATGGAAGTGTTGTGGCCATCAAGAAACTGATTCATGTCAGTGGACAAGGGGACAGGGAATTCACTGCTGAGATGGAAACCATTGGGAAAATCAAGCACAGGAACCTTGTTCCCCTTCTGGGCTACTGCAAGGTTGGGGAAGAAAGACTCTTGGTGTATGAGTACATGAAGTATGGAAGTCTAGAAGATGTTCTGCATGACCCGAAGAAAGCAGGGATCAAGCTGAGCTGGGCAGTGAGGAGGAAGATTGCAATTGGAGCTGCTAGGGGATTGGCTTTTCTTCACCACAATTGTATCCCCCACATCATTCACAGGGACATGAAATCAAGCAATGTGTTGCTAGATGAAAATCTGGACGCCAGGGTCTCTGATTTTGGAATGGCTAGGCTGATGAGTGCTATGGATACCCATTTGAGTGTCAGCACACTAGCAGGAACACCGGGCTATGTTCCTCCCGAGTACTACCAGAGCTTCAGATGCTCTACTAAAGGTGATGTTTATAGTTATGGTGTTGTTTTGCTGGAGCTGCTGACAGGGAAAAGGCCTACGGACTCGGCTGATTTTGGTGATAACAATCTTGTGGGGTGGGTGAAACAACATGCAAAACTGAAAATAAGTGATGTTTTTGACCCAGAGCTCATGAAAGAAGACCCCAATCTAGAGATTGAGCTTTTGCAGCACTTAAAGGTGGCTTGTGCTTGCTTGGATGATAGACATTGGCGGCGACCTACAATGATTCAAGTCATGGCAATGTTCAAGGAAATCCAAGCGGGGTCTGGGATGGATTCTCAATCTACCATAGCCACCGAAGATGAAGGTTTTAATGCTGTTGAAATGGTAGAGATGAGCATTAAAGAAGCCCCTGAATTGAGCAAGCATTAG 3579 0.487 MKSLYSSSKSFSLAFKLLLLLPLFLPCWCAASPSRDPTEQLINFKATLPNPNLLPNWLPNQNPCSFTGVTCNQTMVTSIDLTNLALNTNLTIVATYLLTLDHLQVLTLKSTNLTASAISVSHSVKCSSSLTTVDLSQNILSGSFSTFSFLASCSNLQSLNLSNNLLEFDSPRWSFPSSLQVLDLSYNKFTGPSVFPWVLTPGLQHLALKGNKITGEIDFSGTSLRYLDLSSNNFSVSIPSFGECSALQHLDLSTNKYFGDIARTISPCKNLIHLNLSGNQFSGTVPFLPSGSLQFLYLAANHFHGQIPKSLADLCSTLVELDLSSNNLTGVVPGELGACSTLESFDISSNKFTGALPVEVFTEMSSLRDLAVSFNEFVGTLPVSLVSKLLSLESLDLSSNNLSGPIPSGLCEDPRNNLKELYLQNNRFTGFIPPTLSNCSHLVALDLSFNFLEGTIPPSLGSLSRLRDLIMWLNKLHGEIPQELSQMQSLENLILDFNELSGSIPSGLMNCTKLNWISLSNNRLSGEIPAWIGKLSNLAILKLSNNSFSGKIPPELGDCPSLIWLDLNTNSLSGPIPPVLFKQSGKIAVNFIRGKTYVYIKNDGSRECHGAGNLLEFAGISQQQLNRISTRNPCNFTRVYGGKLQPTFNHNGSMIFLDISHNMLSGTIPKEIGEMYYLYILNLGHNNISGDIPQELGRIKNLNILDLSNNRLQGPIPQALTGLSLLTELDLSNNYLSGMIPESGQFDTFSASRFQNNSGLCGVPLPPCGVVSGTSADAQNQKAHKNHASLAGSVAMGLLFSVFCIFGLIIVAIETRKRRKKKEAAIDGYIDGGNSHSGTANVSWKLTSAREALSINLATFEKPLRKLTFADLLEATNGFHNDSLIGSGGFGDVYKAQLKDGSVVAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKYGSLEDVLHDPKKAGIKLSWAVRRKIAIGAARGLAFLHHNCIPHIIHRDMKSSNVLLDENLDARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSADFGDNNLVGWVKQHAKLKISDVFDPELMKEDPNLEIELLQHLKVACACLDDRHWRRPTMIQVMAMFKEIQAGSGMDSQSTIATEDEGFNAVEMVEMSIKEAPELSKH. 1193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01974 1192 PRINTS Leucine-rich repeat signature 699 712 - -
Seca3g01974 1192 PRINTS Leucine-rich repeat signature 318 331 - -
Seca3g01974 1192 FunFam Leucine-rich repeat receptor protein kinase EMS1 505 593 - -
Seca3g01974 1192 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 80 286 - -
Seca3g01974 1192 SMART serkin_6 879 1151 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01974 1192 Pfam Leucine Rich repeat 390 404 IPR001611 GO:0005515
Seca3g01974 1192 Pfam Leucine Rich repeat 315 330 IPR001611 GO:0005515
Seca3g01974 1192 Pfam Leucine Rich repeats (2 copies) 222 261 IPR025875 -
Seca3g01974 1192 Gene3D - 590 650 - -
Seca3g01974 1192 SUPERFAMILY RNI-like 291 578 - -
Seca3g01974 1192 Pfam Leucine rich repeat 678 736 IPR001611 GO:0005515
Seca3g01974 1192 Pfam Leucine rich repeat 513 572 IPR001611 GO:0005515
Seca3g01974 1192 Pfam Brassinosteroid receptor island domain 585 649 IPR045381 -
Seca3g01974 1192 SMART LRR_typ_2 389 413 IPR003591 -
Seca3g01974 1192 SMART LRR_typ_2 699 722 IPR003591 -
Seca3g01974 1192 SMART LRR_typ_2 314 338 IPR003591 -
Seca3g01974 1192 SMART LRR_typ_2 535 559 IPR003591 -
Seca3g01974 1192 SMART LRR_typ_2 487 511 IPR003591 -
Seca3g01974 1192 SMART LRR_typ_2 417 439 IPR003591 -
Seca3g01974 1192 SMART LRR_typ_2 723 746 IPR003591 -
Seca3g01974 1192 SUPERFAMILY Protein kinase-like (PK-like) 865 1157 IPR011009 -
Seca3g01974 1192 FunFam Brassinosteroid LRR receptor kinase 955 1156 - -
Seca3g01974 1192 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 173 414 - -
Seca3g01974 1192 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 646 767 - -
Seca3g01974 1192 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 415 504 - -
Seca3g01974 1192 CDD STKc_IRAK 885 1154 - -
Seca3g01974 1192 Gene3D Ribonuclease Inhibitor 41 768 IPR032675 -
Seca3g01974 1192 Pfam Leucine rich repeat N-terminal domain 39 72 IPR013210 -
Seca3g01974 1192 SUPERFAMILY L domain-like 56 379 - -
Seca3g01974 1192 ProSiteProfiles Protein kinase domain profile. 879 1154 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01974 1192 FunFam serine/threonine-protein kinase BRI1-like 2 840 954 - -
Seca3g01974 1192 ProSitePatterns Protein kinases ATP-binding region signature. 885 908 IPR017441 GO:0005524
Seca3g01974 1192 FunFam Serine/threonine-protein kinase BRI1-like 1 592 649 - -
Seca3g01974 1192 Gene3D Transferase(Phosphotransferase) domain 1 955 1156 - -
Seca3g01974 1192 Pfam Leucine Rich Repeat 417 439 IPR001611 GO:0005515
Seca3g01974 1192 Pfam Leucine Rich Repeat 270 296 IPR001611 GO:0005515
Seca3g01974 1192 Pfam Protein kinase domain 879 1148 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01974 1192 Gene3D Phosphorylase Kinase; domain 1 839 954 - -
Seca3g01974 1192 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1001 1013 IPR008271 GO:0004672|GO:0006468
Seca3g01974 1192 SUPERFAMILY L domain-like 646 778 - -
Seca3g01974 1192 ProSiteProfiles Leucine-rich repeat profile. 223 245 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01974 Seca-Chr3 34675102 34678680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01974 31 1188 Receptor kinase-like Gene Family AT4G39400 69.139 0.0 1536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Seca3g01974 Pkinase 9.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01974 K13415 - gmx:100799772 1832.77