Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01970 ATGGAAGGTCATGAGATGCAGTTGGTGATCCAAAAAAAGCTCTTTAAGAGTGATATGAACTCTAATAATGGGAGGTTCTCCATCCCAATACAACAAATCCAACAAGATGCAAGGGATTTCCTTACAGAGAGAGTGGAGCTTTATTTGACAGTACGTGAAGGTGAAGGGAAAATCCAAAAGTTTGCTGGTTTCTTAGTGTCTGTGTTGGATCCAAGTCTTAAACTTAACAACATGTGTTTCAAGAAATGGAAGATGGAGCACACAGTGGTGCACAATATAACTAGTGGATGGAACAACCTTGTGAGAAATAATTCTTTGAAAGCCAATGATACAGTGCAATTATGGTCTTTCAGAAGCAACAACGATTACTTGTGTTTTGCACTCATTAGGATTTAA 396 0.3813 MEGHEMQLVIQKKLFKSDMNSNNGRFSIPIQQIQQDARDFLTERVELYLTVREGEGKIQKFAGFLVSVLDPSLKLNNMCFKKWKMEHTVVHNITSGWNNLVRNNSLKANDTVQLWSFRSNNDYLCFALIRI. 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01970 131 Gene3D - 1 128 IPR015300 -
Seca3g01970 131 Pfam B3 domain-containing protein At2g31720-like 3 102 IPR005508 GO:0003677
Seca3g01970 131 ProSiteProfiles B3 DNA-binding domain profile. 81 131 IPR003340 GO:0003677
Seca3g01970 131 SUPERFAMILY DNA-binding pseudobarrel domain 9 127 IPR015300 -
Seca3g01970 131 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 1 129 IPR005508 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01970 Seca-Chr3 34598682 34599077 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01970 1 128 B3 DNA Binding Superfamily AT1G05930 26.357 1.43e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01970 - - tpra:123920509 121.709