Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01969 ATGGGATGCGTTTTTGGCAAATTCTCTTCACCCCCTCGCAAAGATGAGAGGCGGAAACGGCACAGTCACAATGGAAATGTGAAGAGAGTAGCCAGCCGGACAGGTTCGAGAAAAGATGGGTTAAAGAGGGAAATTCAGAGACCAAGAATCACTGTTCATAATAATAATAAGGATTCTGCTGCAGAGAACAATGCACAGAACATTTCAGGTTGCGGTGCAGTGAGAGGAGAAGAAAACGAAAAACCTGTTGCTAGAGAAGAGAAGAAGATTACTAGATCATATGATCTTGGGGACGGTTGGCCAAAGTGGTTAGTTGATAATATTCCAAAAGATGTTTTGGATACTCTGCTTCCTAAGAGCGCTGATTCCTATGTAAAACTTGCCAAGATAGGACGTGGAACATATAGTAATGTGTATAAGGCCCGAGAAAAGGGCACAGGAAAGATTGTTGCTTTGAAGAAGGTGCGCTTTGACACAACGGATTCTGAAAGTATCAAGTTTATGGCAAGAGAGATTATGATACTGCAGAAGCTGGATCATCCCAATGTCATTAAACTTGAAGGACTAGCAACATCACGGATGCAGTATAGTCTTTATCTCGTTTTTGATTTCATGCAGTCTGATCTCACCAGAATCATTTCCCGACCTGGGGAGAGACTCACAGAAAGACAGATCAAGTGCTTTATGCAGCAGCTGCTTTCTGGCCTCCAACACTGTCACGATAGAGGAGTTATGCACAGAGATATTAAAGCTTCTAACTTGTTAATAGACAAAAAAGGGGTGCTGAAAATTGCAGATTTTGGGCTTGCAAAGTCTTTTGCTGTTAAACATGAAGCACCTCTTACAAATAGAGTGGTGACACTTTGGTATAGAGCTCCTGAACTTCTTTTAGGTTCAACTGATTATGATTTTGGCATTGATCTCTGGAGCGCTGGATGCCTATTGGCTGAGATGTTTGTTGGAAGACCAATTATGCCCGGCAGGACAGAGGTTGAACAGCTTCACATGATCTTCAAACTTTGTGGTTCTCCTTCAGAGAATTACTGGAGAAAACTGAAGCTAACCACAAGCTACCGGCCAGCACAACATTACAAGCCTAGCTACCGAGAGGCCTTCAAGAATTTTCCTTCCTCTTCCTATGATCTGTTGGCCACACTTCTTGATCTTGACCCTGCCCATCGTGGCACTGCTGCCTCTGCTCTCCGAAGTGAATTCTTCAAATCTAGTCCATTACCTTGCCATCCTTCAGCTCTACCAGTGATCTACAAAGACGAGGATGAACGCTTACAAATTAAGAGACGCAAAAGGCAAAGAGCTTTGAAAAGAAGGCAACAATCTCAACCAAGTACAAGTGATGTCATTCATTCAGGAAAGAACCAAACTGATGAAGAACCCAGGAGAGATTCAAAAGAGCTTTGGGAGGAGAAGAATATTATTGAGCAACATCACAAGGAAGGTCAAGAAATGGGCAATAGTGCAAGCAGTACATCGTCAGGGTCAAGACTGGTTCTTAACGAAGGGAGCAGCAGCATGAATGCATCTATATCTCCACCTTTTGGGAGAGTTAAACCTCCCAATACCGAAGGCCATCATCCTAATGCTCTTAAGAACACAAAGAACTATAGTGCTCTCTTACAGGCCTCTAAGGTAGAAGGCAATGACTTTGCACAGCTTCGCAGGTCCTTCTCTACGTTCGATTATCGACTTGATACAGACAAGATAGCAAAACTCTCTGGATTACCTAAAGAGATTTAA 1755 0.4296 MGCVFGKFSSPPRKDERRKRHSHNGNVKRVASRTGSRKDGLKREIQRPRITVHNNNKDSAAENNAQNISGCGAVRGEENEKPVAREEKKITRSYDLGDGWPKWLVDNIPKDVLDTLLPKSADSYVKLAKIGRGTYSNVYKAREKGTGKIVALKKVRFDTTDSESIKFMAREIMILQKLDHPNVIKLEGLATSRMQYSLYLVFDFMQSDLTRIISRPGERLTERQIKCFMQQLLSGLQHCHDRGVMHRDIKASNLLIDKKGVLKIADFGLAKSFAVKHEAPLTNRVVTLWYRAPELLLGSTDYDFGIDLWSAGCLLAEMFVGRPIMPGRTEVEQLHMIFKLCGSPSENYWRKLKLTTSYRPAQHYKPSYREAFKNFPSSSYDLLATLLDLDPAHRGTAASALRSEFFKSSPLPCHPSALPVIYKDEDERLQIKRRKRQRALKRRQQSQPSTSDVIHSGKNQTDEEPRRDSKELWEEKNIIEQHHKEGQEMGNSASSTSSGSRLVLNEGSSSMNASISPPFGRVKPPNTEGHHPNALKNTKNYSALLQASKVEGNDFAQLRRSFSTFDYRLDTDKIAKLSGLPKEI. 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01969 584 Gene3D Phosphorylase Kinase; domain 1 113 206 - -
Seca3g01969 584 Pfam Protein kinase domain 124 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01969 584 Gene3D Transferase(Phosphotransferase) domain 1 207 452 - -
Seca3g01969 584 ProSitePatterns Protein kinases ATP-binding region signature. 130 153 IPR017441 GO:0005524
Seca3g01969 584 FunFam Putative serine/threonine-protein kinase 207 444 - -
Seca3g01969 584 MobiDBLite consensus disorder prediction 434 536 - -
Seca3g01969 584 ProSiteProfiles Protein kinase domain profile. 124 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01969 584 SMART serkin_6 124 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01969 584 SUPERFAMILY Protein kinase-like (PK-like) 119 413 IPR011009 -
Seca3g01969 584 MobiDBLite consensus disorder prediction 1 64 - -
Seca3g01969 584 ProSitePatterns Serine/Threonine protein kinases active-site signature. 244 256 IPR008271 GO:0004672|GO:0006468
Seca3g01969 584 MobiDBLite consensus disorder prediction 32 51 - -
Seca3g01969 584 PANTHER CELL DIVISION PROTEIN KINASE 122 412 - -
Seca3g01969 584 MobiDBLite consensus disorder prediction 457 487 - -
Seca3g01969 584 FunFam probable serine/threonine-protein kinase At1g54610 111 206 - -
Seca3g01969 584 MobiDBLite consensus disorder prediction 488 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01969 Seca-Chr3 34585549 34589913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01969 119 448 Core Cell Cycle Gene Families AT5G10270 47.443 7.42e-103 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Seca3g01969 Pkinase 1e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01969 K08819 - gmx:100782603 710.294