Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01968 ATGGATTCTGCAAGGAGTTGGTTGCAGAAGTTTCAGCCACGAGATAGAATGAGGGCCTCTACGAGGAGGAAGGATGATGTTAATGGCGGAAACGAAGTCTCAAATGAGCCTTTGGATGAAGCTGCTCTTTCCAATATCACAAAGCAAAAGGTTGCGGCAGCCAAGCAGTATATTGAAAACCACTACAAGGAGCAAATGAAGAACCTCCAGGAAAGGAAGGAGCGTCGAATCATCTTGGAAAAGAAGTTAGCTGATGCTGATGTTTCTGAGGAAGATCAAAATAATCTGTTGAAGTTTTTAGAGAAAAAGGAAACTGAGTATATGCGTCTTCAGAGGCACAAAATGGGTGTTGATGATTTTGAGTTATTGACTATGATTGGAAAAGGTGCATTTGGGGAGGTTAGAGTCTGTAGGGAAAAGACTACAGGTCATGTATATGCGATGAAAAAGCTAAAGAAGTCAGAGATGCTTCGTAGAGGCCAGGTAGAACATGTTAGAGCTGAGAGGAATCTCCTTGCAGAGGTTGATAGCAATTGTATAGTCAAACTTTATTGTTCTTTCCAAGATGAAGAGTATCTGTATCTTATTATGGAGTATCTACCGGGCGGGGATATGATGACTCTACTCATGAGAAAGGATACTTTGACTGAAGATGAAGCCCGATTTTATGTAGGAGAAACAGTTTTGGCTATTGAATCTATACATAAACACAATTATATACATAGGGATATTAAGCCCGATAACTTATTACTTGATAGATATGGACATGTGAGACTATCAGATTTTGGACTATGTAAACCATTAGACTGTAGTACACTTGAAGAAGCAGATTTTTCTATTGGCCAAAATGCTAATGGATCTATGCAAAATGAAGAACGTACAGGTCCAAAACGTACACAGCAAGAACAACTAGAAAACTGGCAGAAGAACAGAAGGACACTTGCTTATTCTACTGTTGGTACACCAGATTATATTGCTCCAGAAGTTCTATTGAAGAAAGGTTATGGAATGGAATGTGATTGGTGGTCACTTGGAGCTATTATGTATGAAATGCTAGTGGGATATCCGCCATTTTATTCTGACGATCCGATGTCAACATGTAGGAAGATAGTAAATTGGAGATCTCACTTGAAATTTCCTGAAGAAGCAAGGTTATCTCTAGAGGCCAAAGATCTTATAAGCAAGCTATTGTGTAATGTCAACCAGAGATTGGGGTCAAATGGTGCAGATGAAATAAAGGTGTTGTATGGTGTGTCCTTTTTCTAA 1266 0.3918 MDSARSWLQKFQPRDRMRASTRRKDDVNGGNEVSNEPLDEAALSNITKQKVAAAKQYIENHYKEQMKNLQERKERRIILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFELLTMIGKGAFGEVRVCREKTTGHVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRYGHVRLSDFGLCKPLDCSTLEEADFSIGQNANGSMQNEERTGPKRTQQEQLENWQKNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWRSHLKFPEEARLSLEAKDLISKLLCNVNQRLGSNGADEIKVLYGVSFF. 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01968 421 PANTHER SERINE/THREONINE-PROTEIN KINASE 36 413 - -
Seca3g01968 421 FunFam Non-specific serine/threonine protein kinase 314 421 - -
Seca3g01968 421 ProSiteProfiles Protein kinase domain profile. 120 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01968 421 FunFam Non-specific serine/threonine protein kinase 91 203 - -
Seca3g01968 421 MobiDBLite consensus disorder prediction 9 30 - -
Seca3g01968 421 Pfam Protein kinase domain 121 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01968 421 MobiDBLite consensus disorder prediction 1 41 - -
Seca3g01968 421 Gene3D Transferase(Phosphotransferase) domain 1 206 416 - -
Seca3g01968 421 CDD MobB_NDR_LATS-like 54 115 - -
Seca3g01968 421 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Seca3g01968 421 SMART serkin_6 120 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01968 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Seca3g01968 421 Gene3D Phosphorylase Kinase; domain 1 110 205 - -
Seca3g01968 421 SUPERFAMILY Protein kinase-like (PK-like) 102 411 IPR011009 -
Seca3g01968 421 MobiDBLite consensus disorder prediction 281 303 - -
Seca3g01968 421 FunFam Non-specific serine/threonine protein kinase 204 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01968 Seca-Chr3 34549364 34558660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01968 1 414 AGC Kinase Gene Family AT2G20470 80.615 0.0 691
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Seca3g01968 Pkinase 2e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01968 K08790 - gmx:100805940 779.63