LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g01963	ATGTGTGTGTTAAAGGTGGCGAATCCTAGAGGGAAAGTTGACGAAAGAGAATTCCATGAAGGGGAATTGTCAATGCAAATGATGTTTCCAGGTATGAACAGAGAGAGGGAGATGTCTGCCATGGTCTCAGCTTTGACCCACATAGTCTCCGGAGATGTTCCAACCGGTGCTGATTATACTGTTCCTGATCCTGATCCTGATCAAGATCAACCAAGTGCAATTGCAGAAGTTGTTACACCAAACAAGCCTTCTTCTCCTTCTGTAACAACACCAACACAATCTTTGTCTTCTTCTCTAAAAAGAAGTAGGGAAGATGACAGATCCTTCTCACACTCATCCCCTGCTATCACAACAGAAAGCTTATTGATTTATGTTGATGTATGGAATGAAGTTGTAGAATGTTCAAGCAGTAGCACAGCAAGAAGAGTAACTGGGCAAATGGGAAATGCTGTATATGAATACAGAACAACAGAGAATGTGGTGAGAGAAGAAGGAGGAAGGAGAAAATACAGAGGTGTGAGACAGAGACCATGGGGGAAATGGGCTGCAGAGATTAGAGACCCATTCAAAGCAGCAAGAGTGTGGCTTGGCACATTTGAAACAGCTGAAGCAGCTGCTAGAGCATACGATGAAGCTGCACTGCGTTTCAGAGGCAACAAAGCTAAACTCAATTTCCCTGAAAATGTCACTCTTCGCCAACCTCCTCCACCTACCCAATTGAGCATTTCCAATTCTCCCACTTCCATTTCAACCTCCACCGACCCAATTGTTCATACTGAAGCTCTTCCTTCTTCTCAGATTTCAAGCAATTTTTATGAGTATTTTCAGCTCCCAGGCTTCTCCAGGAACCTCTATGGCTATGATGATCACATGATTATGACATCTACTGTGGCTTCTCATCTTCAATCTTCGTCGTCGCCACCACCACCACCTTCTTCTTCTTCTGCCTTTGCTTCCTCTATTACTTCTTCACAGGTCACTGCCTCTCTTCCTTCGTTTTATTCTACCCAGTTGCCACCATGGTCAACTTCTTCTGGGTATAGTTCTTCCTCCTCAGGATGA	1062	0.4416	MCVLKVANPRGKVDEREFHEGELSMQMMFPGMNREREMSAMVSALTHIVSGDVPTGADYTVPDPDPDQDQPSAIAEVVTPNKPSSPSVTTPTQSLSSSLKRSREDDRSFSHSSPAITTESLLIYVDVWNEVVECSSSSTARRVTGQMGNAVYEYRTTENVVREEGGRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFETAEAAARAYDEAALRFRGNKAKLNFPENVTLRQPPPPTQLSISNSPTSISTSTDPIVHTEALPSSQISSNFYEYFQLPGFSRNLYGYDDHMIMTSTVASHLQSSSSPPPPPSSSSAFASSITSSQVTASLPSFYSTQLPPWSTSSGYSSSSSG.	354

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g01963	353	MobiDBLite	consensus disorder prediction	333	353	-	-
	Seca3g01963	353	CDD	AP2	169	228	IPR001471	GO:0003700\|GO:0006355
	Seca3g01963	353	PRINTS	Ethylene responsive element binding protein signature	170	181	IPR001471	GO:0003700\|GO:0006355
	Seca3g01963	353	PRINTS	Ethylene responsive element binding protein signature	192	208	IPR001471	GO:0003700\|GO:0006355
	Seca3g01963	353	MobiDBLite	consensus disorder prediction	53	72	-	-
	Seca3g01963	353	MobiDBLite	consensus disorder prediction	234	253	-	-
	Seca3g01963	353	PANTHER	DNA-BINDING DOMAIN	113	303	IPR044808	GO:0003700\|GO:0009873
	Seca3g01963	353	MobiDBLite	consensus disorder prediction	300	319	-	-
	Seca3g01963	353	Gene3D	AP2/ERF domain	168	228	IPR036955	GO:0003700\|GO:0006355
	Seca3g01963	353	Pfam	AP2 domain	169	218	IPR001471	GO:0003700\|GO:0006355
	Seca3g01963	353	SUPERFAMILY	DNA-binding domain	169	227	IPR016177	GO:0003677
	Seca3g01963	353	SMART	rav1_2	169	232	IPR001471	GO:0003700\|GO:0006355
	Seca3g01963	353	MobiDBLite	consensus disorder prediction	79	98	-	-
	Seca3g01963	353	FunFam	Ethylene-responsive transcription factor 2	168	227	-	-
	Seca3g01963	353	MobiDBLite	consensus disorder prediction	227	253	-	-
	Seca3g01963	353	MobiDBLite	consensus disorder prediction	79	112	-	-
	Seca3g01963	353	ProSiteProfiles	AP2/ERF domain profile.	169	226	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g01963	Seca-Chr3	34516226	34517988	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca3g01963	167	254	AP2-EREBP Transcription Factor Family	AT5G13330	69.318	1.79e-34	124

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Seca3g01963		AP2	2.6e-14	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca3g01963	-		-	mtr:11421690	310.457