Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01959 ATGGACTTCGACGAGTACGATTACTTGGAGAAGACAGTGGAGGAGCTAGACGACAGAGACTCGACCAAGAAGAAGAAAGAGAGCGGCGATAAGACCGAAAGGAGCTACAGGAAGCGCGAGGAGATCGACGACGGCGCTGAAGACAAGAAGAGCAAGAGGTCCAGGGGCGACGACGAGAATGGCTCCAAGAAGGATAAAGATCGTGATGACCGCGACAAGGAGCGCCATAGAAGTAGCAGGGATAGGGACAGAGACAGAGACAGAGACAGTGAGAGGAGTAGCAGAGACAGAGACAGAGATAGAGATACCGACAGGGAGAAGGAGAGAGACAAAGAGAAAGATAGGAGAGACAGGGACAAAGAAAAGGAGAAGGAAAAGGAGAGGAGAGAAAGGGACAGGGAGAAAGAACGGGAGAGAGAACGGGAGGAGAGAGAGAGGTCCAGGAGGAGTAGGAGTCGTTCTGAGCGAGACAGAGAGAGGGAACGAGATTTCGAATCGAGAGATAGCCGGAGATTTAGGGACAAGAAAGAGGCTGTGGAGCCTGAGGCGGACCCTGAAAGGGATCAGAGAACTGTTTTTGCCTACCAGATGCCCTTAAAGGCAACTGAGAGGGATGTTTATGAATTCTTCTCAAAAGCTGGCAAGGTGAGGGATGTCCGTCTGATCATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGGTATGATACTCTCAGCTTGAGCTGTCCTTCACTAGAGTTTTTGTTTCCCTACATCTCTTTGCTGTATATTGAATTTTATGATGCAATGTCAGTGCCAATGGCGATTGCTCTCTCTGGCCAACTTCTTCTTGGACAGCCTGTAATGGTCAAACCTTCAGAGGCTGAAAAAAACCTAGTTCAATCTAATACTACTAGTGGAGCTGCTGGTGTAGCAGGACCATATGGAGCTGTGGACAGAAAACTATATGTGGGAAACCTTCACTTCAATATGACTGAGAGTCAGTTGAGAGAGATTTTTGAGCCATTTGGTCCAGTGGAGCTTGTACAACTGCCTCTTGACCTGGAGACAGGACACTGCAAGGGTTTTGGGTTTGTTCAATTTGCCAATCTTGAGCATGCCAAGGCTGCTCAGAGTTTAAATGGAAAATTGGAAATTGCGGGCAGGGTTATCAAGGTTTCATCTGTAACAGATCATGTTGGAAGCCAAGACATAACTGCAAAATCTGCAGACTTTGATGATGATGAAGGTGGATTGTCTTTAAATGCCCAATCAAGAGCCTTGCTTATGCAGAAGCTGGATCGCTCTGGCATTGCCGTACCTGGTGTGCCCATTATAAATGGGTCAGCTCCTGCTCAACAGGCTAGCTTGCCTATTGGTAATCCAGGAATAGTACCAACACCAGCTCTCCCAACGCAGATTATGCCTACCCAAGTGGCTGAACCTGTTGGAACCCCTAGTGAATGTTTATTGTTGAAGAATATGTTCGATCCAGCCACAGAGATAGAGCCAGATTTTGATCTAGATATCAAAGACGATGTAGAAGAAGAGTGTTCTAAATTTGGGCGGGTGAAGCATATATATGTTGACAAGAGAAGTGCAGGTTTTGTGTATTTGCGGTTTGAAACAGTAGAAGCATCAAGTGCTGCTCAACGTGCAATGCACATGAGGTGGTTTGCACGCAGATTGATTTCAGCTATCTACATGCAACCTCAGATATATGAAGCCAAGTTTAAAGGGGAAGTTTGA 1728 0.4659 MDFDEYDYLEKTVEELDDRDSTKKKKESGDKTERSYRKREEIDDGAEDKKSKRSRGDDENGSKKDKDRDDRDKERHRSSRDRDRDRDRDSERSSRDRDRDRDTDREKERDKEKDRRDRDKEKEKEKERRERDREKEREREREERERSRRSRSRSERDRERERDFESRDSRRFRDKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYDTLSLSCPSLEFLFPYISLLYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTSGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVELVQLPLDLETGHCKGFGFVQFANLEHAKAAQSLNGKLEIAGRVIKVSSVTDHVGSQDITAKSADFDDDEGGLSLNAQSRALLMQKLDRSGIAVPGVPIINGSAPAQQASLPIGNPGIVPTPALPTQIMPTQVAEPVGTPSECLLLKNMFDPATEIEPDFDLDIKDDVEEECSKFGRVKHIYVDKRSAGFVYLRFETVEASSAAQRAMHMRWFARRLISAIYMQPQIYEAKFKGEV. 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01959 575 CDD RRM2_RBM23_RBM39 315 392 - -
Seca3g01959 575 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 391 IPR000504 GO:0003723
Seca3g01959 575 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 571 IPR006509 GO:0003723|GO:0005634|GO:0006397
Seca3g01959 575 CDD RRM3_RBM39_like 480 562 - -
Seca3g01959 575 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 288 IPR000504 GO:0003723
Seca3g01959 575 FunFam Splicing factor CC1-like 297 402 - -
Seca3g01959 575 SUPERFAMILY RNA-binding domain, RBD 181 294 IPR035979 GO:0003676
Seca3g01959 575 Coils Coil 109 157 - -
Seca3g01959 575 SMART rrm1_1 314 387 IPR000504 GO:0003723
Seca3g01959 575 SMART rrm1_1 482 559 IPR000504 GO:0003723
Seca3g01959 575 SMART rrm1_1 191 284 IPR000504 GO:0003723
Seca3g01959 575 Gene3D - 117 299 IPR012677 -
Seca3g01959 575 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 235 IPR000504 GO:0003723
Seca3g01959 575 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 385 IPR000504 GO:0003723
Seca3g01959 575 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 504 557 IPR000504 GO:0003723
Seca3g01959 575 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 406 499 IPR029123 -
Seca3g01959 575 MobiDBLite consensus disorder prediction 12 189 - -
Seca3g01959 575 NCBIfam splicing factor, CC1-like family 256 571 IPR006509 GO:0003723|GO:0005634|GO:0006397
Seca3g01959 575 CDD RRM1_RBM39_like 191 284 - -
Seca3g01959 575 FunFam Splicing factor, CC1-like protein 476 575 - -
Seca3g01959 575 MobiDBLite consensus disorder prediction 1 190 - -
Seca3g01959 575 SUPERFAMILY RNA-binding domain, RBD 313 564 IPR035979 GO:0003676
Seca3g01959 575 Gene3D - 476 574 IPR012677 -
Seca3g01959 575 Gene3D - 309 403 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01959 Seca-Chr3 34414851 34426953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01959 285 386 Eukaryotic Initiation Factors Gene Family AT4G34110 36.893 2.47e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01959 K13091 - gmx:100802446 679.863