Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01947 ATGGATTTGGACGATTTCCGATCCATATTGGATACGGCTGGCGTCGACGTGTGGATGTTCATCGACACCGCAATCGCCGTCGCTTCCTCGGATTACGCCGGCGAGTTGAAGCGCCGCAGAGACGGAATCGTCGAGCGACTCTACGCTGCGACGACGGCTCCCCCGCGGTGCCGGAATTGCGATGACAAAGACCTTCTCAGGCCCAATGGCAACCAAATCAAGAAACAGAGCAACCCTAGCCCCAGCCCCGAACGACAACGACAACAACGCCGCGGTGCCTCTTCTCCTGCAACGCCACAGTCTCTCGGAAACGACGACGACAACGACGAAGAGATAGATCCTTACGGTGGCTTATTCGATGATGAGCAGAAGAAGATTCTAGAGATTAAAGAGCAACTCGAAGAACCTGACCAGTCTGAAGATTCTTTGGTGGAGTTGCTGCAAAATCTCGCCGACATGGATATTACATTCCAAGCGCTAAAGGAAACTGACATCGGGAGGCACGTGAATCGGTTGCGGAAGCATCCCTCCAATGATGTTCGGCGATTGGTTAAGCTACTTGTCAGGAAGTGGAAGGAAATTGTAGACGAGTGGGTGAAATTGAATCCACAGGGAGGAACAAACACTCTCATGGCTGATGGAGACTCGCCTCTCCAGAAAACCACCCAAAATGGGCATCATCATCAGATTCCTGATTTTGCTTACTCTCCAAATCCACACAATGGGAGCTCTGGGTCTGACCGCAACAACTCAGAAGCAGAACCCAAAAAACCAAAAGTAATTCCTCGCTATGAAGCACCGCCAAAACCAACGCCATCATCATCAGTTACTACCCCTGCTTCTGCTTCTCAAAACGTACGAATAACCAACCACTCTGGAGTATATGACCCTTCAATGTGGTTGCTAAAACCACTGGATGAAAATATAATGCCTCAAATTAAAAAACCAAAATATGCAATGAATGTGGAGCTTGAGTTGAAAGTGTCTTGGGACGTTCTTGTCAATGTCCCAAAGTGTTAA 1020 0.4892 MDLDDFRSILDTAGVDVWMFIDTAIAVASSDYAGELKRRRDGIVERLYAATTAPPRCRNCDDKDLLRPNGNQIKKQSNPSPSPERQRQQRRGASSPATPQSLGNDDDNDEEIDPYGGLFDDEQKKILEIKEQLEEPDQSEDSLVELLQNLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKLLVRKWKEIVDEWVKLNPQGGTNTLMADGDSPLQKTTQNGHHHQIPDFAYSPNPHNGSSGSDRNNSEAEPKKPKVIPRYEAPPKPTPSSSVTTPASASQNVRITNHSGVYDPSMWLLKPLDENIMPQIKKPKYAMNVELELKVSWDVLVNVPKC. 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01947 339 MobiDBLite consensus disorder prediction 203 284 - -
Seca3g01947 339 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 123 206 IPR035441 -
Seca3g01947 339 MobiDBLite consensus disorder prediction 70 103 - -
Seca3g01947 339 ProSiteProfiles TFIIS N-terminal domain profile. 121 198 IPR017923 -
Seca3g01947 339 Pfam TFIIS helical bundle-like domain 146 195 IPR017923 -
Seca3g01947 339 SMART TFS2_5 126 197 IPR003617 GO:0005634
Seca3g01947 339 MobiDBLite consensus disorder prediction 57 117 - -
Seca3g01947 339 MobiDBLite consensus disorder prediction 203 229 - -
Seca3g01947 339 CDD TFIIS_I 123 196 - -
Seca3g01947 339 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 120 206 IPR035441 -
Seca3g01947 339 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 286 IPR044790 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01947 Seca-Chr3 34225623 34228808 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Seca3g01947 Med26 1.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01947 - - gmx:100790582 445.277