LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g01946	ATGAGGCTCCTTCTCCGAAAACACCTCTTGTTTTTCCCTTCTTCTTGTTGTTCCTGTTCTTCACCACCAGCTCGCACACTTCTTCTTCGGCTGCAAGTGTGTGAGTTCTCATCTTCTTCTTCTTCTCATCCTCAGCCTCACTGGAGGCGTCACGACGATGAGTCCCGCAACGTTAGGGTTTCGGTTTGGTGGGATTTCGAGAATTGCAACGTTCCCGCCGGCGTTAACATTTTGAAGGTTGCACCTGCCATCACGGACGCTGTCAGGGCCAACGGGATTAAAGGTCCTATTAAGATTACCGCTTTCGGCGATGTTTTGCAGTTCTCCAGAGCTAACCAGGAAGCACTTGCTTTCACTGGGATTCATCTTGCTCACATTCCCAACGGTGGAAAGAATAGTGCTGATAGATCTCTTCTTGTGGATCTTATGCATTGGGTTTCCCAAAATCCTCCACCTGCACATCTCTTTCTGATATCCGGTGATAGAGGCTTTGCTGGCATGTTGCACCGGTTAAGAATGAATAACTACAACATCTTGCTTGCAATTCCAGGAAGGGCTCCTGATGTTCTCTGCAGTGCAGCAACTATAATGTGGCAGTGGCCATTATTGCTTAAGGGAGAAGATCTCAATGGAAAACATTTCAACCATCCTCCTGATGGTCCGTTTGGTTCTTGGTATGGAAACTATAAGGTGCCTCTTGAAGACCCCTACTCAGCTGGTGCTGAGCATTCTGCATCTTTCCAAAATGTGGAGATCTGTGAACCTTCCTTAGAAGCTGCAGTTCCAAAGTCGGTTGTAAGACACGTTAAGCGTATACTGAGTAAAAACCGAAATGGGATCTCCATTATAGATCTTCGTCAAGAGTTGATGAATTGTGATGTGCGTTTGGATAAAAACTTATATGGATATAAAAAGTTTTCCCGATTTCTATTATCAATTCCACACGTACAGCTTCAGCGTCTTGGTGATGGTCATTTTTGTGTACGTCTGGTCCCCTCAGAATCCCCTGAACCCTTTGAGAGAAATGTTGTTCCATCAACAATATCTGCTGTTAAGAATGAGGAGAGGGGCAATGCAGCAACTCCAAAGCTAAATGGTGAGGGTAAAAATATGGATAGAGATGCAGATGGGACAACCTCAATGGCCTCATTGTATGAAAGGAGCACGGATGGTGATTCAAAATCATTTCAACCGGTCCCTTCACAAGGCAAACCTATCGAGGAATATGTGGATGGTAAATCATCAGTTCCTTCATTGGTTGAAAAACATGTGTGTCAACCTCCAAATGAGTTGCAGAAATCTTCTCTGGGCAGTGAGAAGGTTGCAGATGTGGCTAATGCACAATTGTCGGAGAAGGACAATGAAGTTTCCAAAACAAAGACGGGTTCCTTAAAGGTGAGATCTAATACAACTTTAGGGAAGCACTCTGCTGGGAATGATTACACAACGGATGAAAACAATGATATTGCAGATTATGAATCTGGAAAATTTAAATCAAAGGACAAATATGAGAATCCAGTTGAGAAAAGACCTGATGGAAGTGCTGAAACTTATAAAAGAAGTTCAACTTTCTTTAGCTGGATTAAAAGTTGGTTTCCGTTTTGGAAAAGAAGTGCAAAAACTGATGATTCAACTGCTCATCAGAACAAGGTAGTTAGTAATGTTGAGGATCCCAAGTTATCTGCACTGGGCCAGACTGTTAGCCATTTTGGAGAGACCAAGTCATCAGAACTGGACCAGGATGTTAGTCATTCGAGAAAGCCTGAGTTATTTTCTAGTGGTTCATTTTGGAATGACATGGAGTCTTTTGTTTTCTCACCCAAAGGGTCGCTTCTTTTCTCCCAGTCAAGAAGAAGGGAGGATCTGGCACATAAATTACAAAAGCATGGACCCATGGTTCTAAGATCTCTCACTGAAAATAAAATCTTTCAATTGTTGGAGTTGTTAATAGAAGAGAAAAAATGGTTGGAGGAAAGCCCCTCCCAAGCATATCCTTATAGGCTAACACAACCAGTTCAGAAGAACTCATCATTGGGCCAAGCTCATGGTGCAAATGGCTTGGGGTCTCTCTTTCTAACTAGAACACCACAGCCCAACTTGCAAAAATCATTTGAGCATGATGTGGAGAAACACAATCAGAGTATTCATCAGACTAGAGTTTCCACACCTGCCACTGAAACAAAATACACTGAGAGGTCTAGAAATGATATCTTAGCAGACTGTCAGAAACTTGTGAATGAGATATTGAAGGAACACCCAGAGGGGTATAATATTGGTTGTTTTCGAAAGCAATTTCTTGATAGGTATGGCTATCATCTTGATATACAGAAGCTTAGTTATCAGAAGTTGGCATCCTTATTACAGATAATGCCTGGGGTTAAACTAGAGTCCACTTATATGTTACCTTCTGTTCCTGCTGTCTGTGCTTCTGACTCCGAAACTTGTACCCTCAAAACCCAAGTAACCAATGCTAGTCATGCAGACTCCAACTCAGATAATGAATTATCTGATTCAGCCCCGAAATATGATAACATGGATTCTCCTTGGGAGGAATTAGGTCCTGTGTCTGTCAACAATGCCAACCAGAATGATGTGGAATCAAAATTGAGTCAGAAAGCCAAAGAACTGGATAAGCATCCAGACTATGAACCCATAGGCGCAAATTGGGATTATTCTGAATCTGAAGATGATAGCTCTTGTTCAACTCAACTAGAAGAGCAAGGAAAGGCAAAATGTAATGAGCAAGACAGTTCTTTTTGGCAAGCTCTGGATCTGTGGCACAGCAGCAAGGAAGGAGAGAATAGTGTGAAGAAGTCAGACAATATTGAGGGCTTGGGCAGTTCTCTGGTTGATTTGATAAATTCATCCACTGAGTCGTCACGGGGTACCATTTCTAAAATTCCTTCAGGGATTTCCAGAGAGAAGCAAAGATCTCAAAAGTATTCGTTTGTCGCTGATCCCGTCTTACCCGACAAGGACAAGCTCATTGATGGGATATTAGATGGCTTCAAAAAAGCAGATGAGCAAAAAATGCAAAACTGA	3042	0.4237	MRLLLRKHLLFFPSSCCSCSSPPARTLLLRLQVCEFSSSSSSHPQPHWRRHDDESRNVRVSVWWDFENCNVPAGVNILKVAPAITDAVRANGIKGPIKITAFGDVLQFSRANQEALAFTGIHLAHIPNGGKNSADRSLLVDLMHWVSQNPPPAHLFLISGDRGFAGMLHRLRMNNYNILLAIPGRAPDVLCSAATIMWQWPLLLKGEDLNGKHFNHPPDGPFGSWYGNYKVPLEDPYSAGAEHSASFQNVEICEPSLEAAVPKSVVRHVKRILSKNRNGISIIDLRQELMNCDVRLDKNLYGYKKFSRFLLSIPHVQLQRLGDGHFCVRLVPSESPEPFERNVVPSTISAVKNEERGNAATPKLNGEGKNMDRDADGTTSMASLYERSTDGDSKSFQPVPSQGKPIEEYVDGKSSVPSLVEKHVCQPPNELQKSSLGSEKVADVANAQLSEKDNEVSKTKTGSLKVRSNTTLGKHSAGNDYTTDENNDIADYESGKFKSKDKYENPVEKRPDGSAETYKRSSTFFSWIKSWFPFWKRSAKTDDSTAHQNKVVSNVEDPKLSALGQTVSHFGETKSSELDQDVSHSRKPELFSSGSFWNDMESFVFSPKGSLLFSQSRRREDLAHKLQKHGPMVLRSLTENKIFQLLELLIEEKKWLEESPSQAYPYRLTQPVQKNSSLGQAHGANGLGSLFLTRTPQPNLQKSFEHDVEKHNQSIHQTRVSTPATETKYTERSRNDILADCQKLVNEILKEHPEGYNIGCFRKQFLDRYGYHLDIQKLSYQKLASLLQIMPGVKLESTYMLPSVPAVCASDSETCTLKTQVTNASHADSNSDNELSDSAPKYDNMDSPWEELGPVSVNNANQNDVESKLSQKAKELDKHPDYEPIGANWDYSESEDDSSCSTQLEEQGKAKCNEQDSSFWQALDLWHSSKEGENSVKKSDNIEGLGSSLVDLINSSTESSRGTISKIPSGISREKQRSQKYSFVADPVLPDKDKLIDGILDGFKKADEQKMQN.	1014

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g01946	1013	CDD	LOTUS	738	793	-	-
	Seca3g01946	1013	MobiDBLite	consensus disorder prediction	447	493	-	-
	Seca3g01946	1013	Pfam	NYN domain	59	194	IPR021139	GO:0004540
	Seca3g01946	1013	Gene3D	-	732	800	IPR041966	-
	Seca3g01946	1013	MobiDBLite	consensus disorder prediction	461	485	-	-
	Seca3g01946	1013	Pfam	OST-HTH/LOTUS domain	263	325	IPR025605	-
	Seca3g01946	1013	Pfam	OST-HTH/LOTUS domain	739	796	IPR025605	-
	Seca3g01946	1013	ProSiteProfiles	OST-type HTH domain profile.	261	332	IPR025605	-
	Seca3g01946	1013	MobiDBLite	consensus disorder prediction	957	978	-	-
	Seca3g01946	1013	ProSiteProfiles	OST-type HTH domain profile.	737	811	IPR025605	-
	Seca3g01946	1013	CDD	PIN_limkain_b1_N_like	59	183	-	-
	Seca3g01946	1013	MobiDBLite	consensus disorder prediction	822	905	-	-
	Seca3g01946	1013	Gene3D	-	258	336	IPR041966	-
	Seca3g01946	1013	MobiDBLite	consensus disorder prediction	381	400	-	-
	Seca3g01946	1013	MobiDBLite	consensus disorder prediction	822	840	-	-
	Seca3g01946	1013	MobiDBLite	consensus disorder prediction	868	884	-	-
	Seca3g01946	1013	PANTHER	LIMKAIN B LKAP	37	747	IPR024768	GO:0005777\|GO:0010468
	Seca3g01946	1013	MobiDBLite	consensus disorder prediction	352	414	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g01946	Seca-Chr3	34204490	34209108	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca3g01946	58	206	C2H2 Transcription Factor Family	AT5G61190	44.966	4.98e-36	145

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca3g01946	-		-	tpra:123916554	1207.59