Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01940 ATGAAAGGAAAGAAGGCGTATGTGGTTGTGATTGTGATACAAGCCATATACGCCGGTAATTTTCTTCTCTCAAAAGCTGCATTCGACCATGGATTCAACAATTTCATCTTCATCTTCTACAGACAAGCACTAGCAACCCTTTTTCTTACCCCTTTCGCTTTCTTCTTCCAATGGAGACTTGCACCACCTTTGAGTTTCAAGACATTCTGCAACATTTTCTTCCTTTCTTTCTGCGGGATAACTTTAAGCTTGGAAATATATGGTGTTGGTCTTACTTACACCTCTGCAACTATGGCTGCTGCTGTCACAAACTGTCTTCCAGCTATCACCTTCTTCTTGGCGCTCCTACTCAGAATTGAGAGTTTGAAAATAAAGACAGCAGCTGGGATTGCTAAGTTGGTAGGAGTTTTGGCATGCTTGGCTGGTGCAGCAACTCTTGCCTTTTATAAAGGTCCTCATTTTAAGATTTTAAGTCATCATCATCTTTTGGGATACCATAGCCAACAACATCAAGGTCATGTCCCATCTGCTACATGGATAAAGGGTTGCTTCCTCCTGCTCCTCTCCCACACATTATGGGGGCTATGGCTGGTGCTACAGGCTTTTGTTATAAAAAGCTACCCTTCAAAGTTGATCTTCACAACTATTCAGTGTTTCTTAAGCTCGATTCAGTCTTTAGTCATTGCCTTGGCCATAGAAAGGGACATTGAACAATGGAAGTTGGGTTGGAATATCGGGCTTCTCACAGTAGTATACTGTGGAATTATGGTCACCGGTGTCACATTTTACTTACAGACATGGGTTGTAGAGAAAAAAGGACCTGTGTTTCAAGCCTTGTCAACGCCCCTTGCTCTGATTATTACAATTCTCTTCTCTGCAATTGTCTTGGGTGAGATAATGAGTTATTGGGGAGGACTGTACAGCGTGTTGTGGGGAAAGAACAGGGAGGAAACTGCAAAAGCCTCGTTAGACTTGGAGCAAGAATCGGGTTAG 993 0.428 MKGKKAYVVVIVIQAIYAGNFLLSKAAFDHGFNNFIFIFYRQALATLFLTPFAFFFQWRLAPPLSFKTFCNIFFLSFCGITLSLEIYGVGLTYTSATMAAAVTNCLPAITFFLALLLRIESLKIKTAAGIAKLVGVLACLAGAATLAFYKGPHFKILSHHHLLGYHSQQHQGHVPSATWIKGCFLLLLSHTLWGLWLVLQAFVIKSYPSKLIFTTIQCFLSSIQSLVIALAIERDIEQWKLGWNIGLLTVVYCGIMVTGVTFYLQTWVVEKKGPVFQALSTPLALIITILFSAIVLGEIMSYWGGLYSVLWGKNREETAKASLDLEQESG. 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01940 330 PANTHER WAT1-RELATED PROTEIN 7 321 IPR030184 GO:0016020|GO:0022857
Seca3g01940 330 Pfam EamA-like transporter family 181 305 IPR000620 GO:0016020
Seca3g01940 330 Pfam EamA-like transporter family 5 131 IPR000620 GO:0016020
Seca3g01940 330 SUPERFAMILY Multidrug resistance efflux transporter EmrE 40 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01940 Seca-Chr3 34140457 34142476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01940 1 253 Nodulin-like Gene Family AT5G64700 57.692 3.38e-93 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01940 - - gmx:100804562 481.87