Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01937 ATGCTGGAAATCTCAACTTTACCGGTGGAGAACGCTCAGGTAGGGGAGGGCGGTGCTCCTAGTAGCGAGCCAGTCTCCGATGGGTTCAAAGCAGAGCACGGCGAAGAAGGTGACCGGAATTCCGCCGCGAACCGGTGGCCTCGTGAGGAGACAATGGCTTTGCTTAAGATAAGGTCTGAAATGGACGTTGCTTTTAGAGATACCAGCCCCAAAGCCCCTCTCTGGGAACAAGTCTCAAGGAAATTAGCAGAGCTAGGATATCATAGGAATGCAAAGAAGTGCAGGGAGAAGTTTGAGAACATTTACAAGTACCATAGAAGGACCAAGGAAGGTCGTTGTGGTAAATCCAACGGAGGCAAAACTTATCGATTTTTTGAGCAATTAGAAGCTTTATATACCCACCCATCCTCAGAGGGAAAACAACATCATGAGGTGTCGGCGAAATCCACAACAACAACCAATGTTATTCCTCCGGAAAACAACAACGTGAATGTCATCCACGATGCAGTTCCTTGTTCCATTAGATTCCCCAGTGCAAACGTGGTGGAACAGGAACATTCGAGTTCCACCACTTCCTCTTCCGAGGAATTAGGTGCAGGGAGAAAGAACAACAAGAGGAAACTCACCAAGTTTTTCGAGGGGTTGATGAGGGAAGTAATAGAGAGGCAAGAAACTCTACAGAGGAAGTTAATGGAAGTGTTGGACAAGTGTGAAAGGGATCGAATAGCGAGGGAGGAAGCATGGAAGGTGGAAGAGTTGGCTCGGATTAAGAAAGAGCGTGAGCTTCTTGCTCAGGAAAGGTCACTCTCTGCTGCAAAAGATGAAGCTGTACTTGCCTTTTTGAAAAAGATAGCAGAAAACTCTGCAGGAACAACGGTGCAGTTACCAGACAAAATATTTCAGTTTCCAAAAGAAGTGCAAGAAAATGCTAATGGGAATATTGGAGGAGAAAAGCAAGAGTGTGGGAATAATAATGTTAACATTGGGAATTTCATTCACATGAGTTCATCAAGATGGCCAAGGGATGAAGTTGAAGCTTTGATAAGGTTGAGAACACAGATGGATGTGCAAGTGCAATCACAAGGGAATGGATCTAAAGGACCTCTTTGGGAGGAAATTTCCACTGCAATGAAAGGACTTGGTTATGATCGTAGTGCTAAGAGGTGCAAAGAGAAATGGGAGAATATAAACAAGTACTTCAAGAGGATGAAGGAGAAAAATAAGGTGAAACCTATGGATTCTAAAACTTGTCCTTATTATCACCACCTGGAAGCTTTATACAGTAATAAAAAGCCTAAGAAGGTGGATGAGTCAGGTGATTCTGGGAATGAATTGAGGCCTGAGGAGCTATTGATGCATATTATGGGGAGTAGTAGTACTACTAGTCAAGAAGAGAGACAACAACAGTTAGAATCTTCCTCTGAAGATGCTGATAGAGAAAACATGGATCAGAATCAGGGAGATAATGAAGATCAAGATGCAGGGTATCAAATGGTTGCCAATAGTTCTTCCATAGCAATCATGAGTTAA 1530 0.4353 MLEISTLPVENAQVGEGGAPSSEPVSDGFKAEHGEEGDRNSAANRWPREETMALLKIRSEMDVAFRDTSPKAPLWEQVSRKLAELGYHRNAKKCREKFENIYKYHRRTKEGRCGKSNGGKTYRFFEQLEALYTHPSSEGKQHHEVSAKSTTTTNVIPPENNNVNVIHDAVPCSIRFPSANVVEQEHSSSTTSSSEELGAGRKNNKRKLTKFFEGLMREVIERQETLQRKLMEVLDKCERDRIAREEAWKVEELARIKKERELLAQERSLSAAKDEAVLAFLKKIAENSAGTTVQLPDKIFQFPKEVQENANGNIGGEKQECGNNNVNIGNFIHMSSSRWPRDEVEALIRLRTQMDVQVQSQGNGSKGPLWEEISTAMKGLGYDRSAKRCKEKWENINKYFKRMKEKNKVKPMDSKTCPYYHHLEALYSNKKPKKVDESGDSGNELRPEELLMHIMGSSSTTSQEERQQQLESSSEDADRENMDQNQGDNEDQDAGYQMVANSSSIAIMS. 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01937 509 CDD GT1 44 109 - -
Seca3g01937 509 MobiDBLite consensus disorder prediction 1 47 - -
Seca3g01937 509 Gene3D - 339 402 - -
Seca3g01937 509 Gene3D - 46 107 - -
Seca3g01937 509 Pfam Myb/SANT-like DNA-binding domain 337 426 IPR044822 -
Seca3g01937 509 Pfam Myb/SANT-like DNA-binding domain 44 131 IPR044822 -
Seca3g01937 509 MobiDBLite consensus disorder prediction 488 509 - -
Seca3g01937 509 PANTHER FI21293P1 21 489 - -
Seca3g01937 509 FunFam Trihelix transcription factor GT-2 339 402 - -
Seca3g01937 509 MobiDBLite consensus disorder prediction 181 202 - -
Seca3g01937 509 MobiDBLite consensus disorder prediction 469 486 - -
Seca3g01937 509 ProSiteProfiles Myb-like domain profile. 337 397 IPR001005 -
Seca3g01937 509 MobiDBLite consensus disorder prediction 181 198 - -
Seca3g01937 509 Coils Coil 216 236 - -
Seca3g01937 509 ProSiteProfiles Myb-like domain profile. 38 102 IPR001005 -
Seca3g01937 509 MobiDBLite consensus disorder prediction 28 47 - -
Seca3g01937 509 FunFam Trihelix transcription factor GT-2 46 107 - -
Seca3g01937 509 CDD GT1 337 404 - -
Seca3g01937 509 SMART sant 42 104 IPR001005 -
Seca3g01937 509 SMART sant 335 399 IPR001005 -
Seca3g01937 509 MobiDBLite consensus disorder prediction 455 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01937 Seca-Chr3 34075587 34078078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01937 338 428 Trihelix Transcription Factor Family AT1G76880 47.253 2.16e-16 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca3g01937 Myb_DNA-bind_4 5e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01937 - - gmx:100805632 615.92