Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01932 ATGGCTGCCATGAACTCTTCTAGCGTATTGGCTTGTAGCTATGCCATATCTGGTGCAGGATGTTCCGAGCTCAATGTGAAGCTCACTTCAGTGCCCTCACTAACTGTCTCTGGTTCCAAGTTGCCTATGATCAAGGCACGCCAGGCCAGAGTCCCCGAAGCCAAAGAATCTCAAGCAAGTGAAGGAAGGAGAACTGCCCTTGTTCTTTTGGCAGCCAGTCTTTTCACCTCTGTAGCTGCAGCCTCCAATTCTTCTGCTAATGCTGGTGTCATTGAAGAATACCTTGAAAGGAGCAAAGCCAACAAGGAATTGAATGACAAGAAGAGGTTAGCTACTAGTGGAGCAAACTTTGCAAGAGCATACACAGTGCAATTTGGCACTTGCAAGTTCCCTGAGAACTTCACCGGTTGCCAAGATCTTGCCAAACAAAAGAAAGTGCCATTCATTTCTGAGGATTTGGAGATTGAATGCGAAGGAAAGGACAAATACAAGTGTGGTTCTAATGTTTTCTGGAAATGGTGA 522 0.4579 MAAMNSSSVLACSYAISGAGCSELNVKLTSVPSLTVSGSKLPMIKARQARVPEAKESQASEGRRTALVLLAASLFTSVAAASNSSANAGVIEEYLERSKANKELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISEDLEIECEGKDKYKCGSNVFWKW. 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01932 173 PANTHER PHOTOSYSTEM I REACTION CENTER SUBUNIT N, CHLOROPLASTIC 1 173 IPR008796 GO:0009522|GO:0015979
Seca3g01932 173 FunFam Photosystem I reaction center subunit N 89 173 - -
Seca3g01932 173 Gene3D - 89 173 IPR044907 -
Seca3g01932 173 Pfam Photosystem I reaction centre subunit N (PSAN or PSI-N) 42 173 IPR008796 GO:0009522|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01932 Seca-Chr3 33985883 33987655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01932 1 144 Calmodulin-binding Proteins AT5G64040 65.541 4.03e-58 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01932 K02701 - gmx:100499729 273.478