Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01931 ATGTATGCTGCTGCTGCTAATTCCTTCACTTCACCCCTCTTCCATGACATTCTTGAGAATTTCCACTCAAGAAGGTTACTCCTTCACTCCTTACTTAACCAATCAACAAACACAGCCAATCCCCCTGCTTCCACAAGCAGTCATGATTCAACAGAATCATATCTTGGAGATGGTAATTTTGATGCAAATGTTGTTATGGTACTCTCAGTCCTATTATGTGCTCTTTTTTGCTCACTTGGTTTGAACTCCATCATAAGATGTGCATTAAGGTGTTCCAATTTAGTTGTCATGAGTGACTCAACAAACAATCCTCCAGCAAGAGTGGTCAACACAGGGATCAAGAAGAAAGCTCTCAAGACTTTTCCAACAGTGAGTTACTCAGCTGAATTGAACCTTCCAAGTTTGGATTCAGAGTGTGTGATATGCTTGTCAGAGTTCACAAATGGTGATAAGGTGAGAATTTTGCCAAAGTGTAACCATGGTTTCCATGTACGTTGCATTGATAAGTGGCTAAGTTCACACTCATCTTGCCCAAAGTGTAGACAGTGCCTTATTGGGACTTGTCAAAAGATTGTTGGGTGCAGGCAAGCTAGCTCATCACAACTACCAGTAGTACCTATGTTGCCAGTGCCAGAAACAATTATAACCATAGCTCCACTTGAGCCAGAAGGTTTGGTGCGTAATTATAGGGAAGTTAGCTAA 702 0.4145 MYAAAANSFTSPLFHDILENFHSRRLLLHSLLNQSTNTANPPASTSSHDSTESYLGDGNFDANVVMVLSVLLCALFCSLGLNSIIRCALRCSNLVVMSDSTNNPPARVVNTGIKKKALKTFPTVSYSAELNLPSLDSECVICLSEFTNGDKVRILPKCNHGFHVRCIDKWLSSHSSCPKCRQCLIGTCQKIVGCRQASSSQLPVVPMLPVPETIITIAPLEPEGLVRNYREVS. 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01931 233 CDD RING-H2_EL5-like 138 181 - -
Seca3g01931 233 Pfam Ring finger domain 138 181 IPR001841 -
Seca3g01931 233 SUPERFAMILY RING/U-box 117 185 - -
Seca3g01931 233 FunFam RING-H2 finger protein ATL73 99 186 - -
Seca3g01931 233 PANTHER RING-H2 FINGER PROTEIN ATL78 17 225 IPR044602 GO:0016567|GO:0016740
Seca3g01931 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 185 IPR013083 -
Seca3g01931 233 SMART ring_2 139 180 IPR001841 -
Seca3g01931 233 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01931 Seca-Chr3 33979777 33980478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01931 25 185 C3H Transcription Factor Family AT3G10910 45.238 1.17e-41 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01931 K19040 - gmx:100787934 349.362