Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01925 ATGATTACTGAGTTGTTCACCTCGGGGAGCCTCAGACAGTATCGTAGGAAACACAAGAAAGTTGACATGAAGGCTGTTAAAGGATGGGCAAGACAGATTTTAGTGGGGTTAAATTTCCTCCACAGTCACAACCCACCTATTATCCATAGGGACTTGAAGTGCGATAATATATTTATAAATGGTCACCAAGGAGAAGTTAAAATTGGAGATCTGGGGTTGGCAACACTCTTGAAGCAGAATAATGCCAAAAGTGTAATTGGTACCCCAGAGTTTATGGCACCTGAACTGTATGATGAAAATTATAATGAATTAGCCGACATATATTCTTTTGGGATGTGCATGCTTGAGTTGGTGACTTCTGAGTATCCTTACCGTGAATGTAGAAACTCTGCTCAGATATACAAGAAAGTTTCATCTGGTATAAAGCCAGTTGCTCTTTCTAAAGTCAAAGATCCAGAAACAAAATCATTTATTGAGAAATGTCTTGTCCCAGCATCTCAAAGATTGTCAGCAAAGGAACTTCTGATGGACCCTTTTCTCCAAGTGAATGGTTTAGGAAAGAATCGTCCTCTTCCATTACCAGATATTGTCCTTCCAAAATTTGGAGCCTTTGAAAATCGTTGTCTGATGTCAGAAGGTCCAGCTAGTGCACGTACCGGATCCATTTCAATGGATCTCGGTGATACCAGTGAGCTACCATTGATCACTGTATTTTATAGTTCTGTTGATGATGCATCATCTTCTCCATGTGTTGAGATACGAAGGTTGAAGGCAGGTGACATATTTTTTCTAAAAGGTGAAGAAAATGATGAGAACTCTGTATCGTTAGTTCTCCGGATAGCTGATCAGAGCGGGCGGGCAAGAAATATCCATTTCATGTTCTACCTCGACAGTGATACTGCCATCTCAATTTCAAGTGAAATGGTTGAACAGCTTGAACTTGCCGAGCAGAATATTAAATTCATTGCTGAGTTAATTGATCTGTTAATGATAACTTTGGTTTCTGATTGGAAACCTTGTGTAGCAATTGATCATTTAGTTTCTCCAAATAGTAAAAGGATTCATCTGAGCCAACGAAAAAAAGACTCAGAGATGGCAAAATATAAACAAAGTTCAGAAGATTCTAGCCAAATTGTGGCTGATGATGTAGGTCCCTCAATCTCACCTGGAAGATCAGCGGAAAAAGAAAACCATGATGATGTGACTTTTGACGAGGTTTTATCTCATGCAAGCATTGGTCTTCAAAGGGCAACAAAGACAGATGATTTGTGTTCTGTAATGTCATATGCTTCTGCAGCATCTGACTTCAATGATAAGAATTTATCTGCAGTTTCATTCATGTCTGCTAAATCAGGTTTTACAGACATCAACTTACCTACAGTGAATTGTGCGAGTCAAACCTCGCTTGCATCTGAAATCGGGACATCACCTGATAATAAGAGCAAGCTTCAATATCATCCCATTAGTGCTTCCTCCTCCGCTCCTGATGATGAGTTGAGAGTAGAGTTAGAGATGATTGAACAGCAATATCAAGAGGCAATTAAAGATTTATCCAAAAGAAGATACCAGGCCATCATAGAGACCAGAAGGAGGCTGTCACAAAAAAATGCAATCATAGAATAA 1623 0.3931 MITELFTSGSLRQYRRKHKKVDMKAVKGWARQILVGLNFLHSHNPPIIHRDLKCDNIFINGHQGEVKIGDLGLATLLKQNNAKSVIGTPEFMAPELYDENYNELADIYSFGMCMLELVTSEYPYRECRNSAQIYKKVSSGIKPVALSKVKDPETKSFIEKCLVPASQRLSAKELLMDPFLQVNGLGKNRPLPLPDIVLPKFGAFENRCLMSEGPASARTGSISMDLGDTSELPLITVFYSSVDDASSSPCVEIRRLKAGDIFFLKGEENDENSVSLVLRIADQSGRARNIHFMFYLDSDTAISISSEMVEQLELAEQNIKFIAELIDLLMITLVSDWKPCVAIDHLVSPNSKRIHLSQRKKDSEMAKYKQSSEDSSQIVADDVGPSISPGRSAEKENHDDVTFDEVLSHASIGLQRATKTDDLCSVMSYASAASDFNDKNLSAVSFMSAKSGFTDINLPTVNCASQTSLASEIGTSPDNKSKLQYHPISASSSAPDDELRVELEMIEQQYQEAIKDLSKRRYQAIIETRRRLSQKNAIIE. 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01925 540 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 532 - -
Seca3g01925 540 ProSiteProfiles Protein kinase domain profile. 1 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01925 540 MobiDBLite consensus disorder prediction 357 399 - -
Seca3g01925 540 Gene3D Transferase(Phosphotransferase) domain 1 6 184 - -
Seca3g01925 540 Pfam Protein kinase domain 1 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01925 540 MobiDBLite consensus disorder prediction 471 491 - -
Seca3g01925 540 MobiDBLite consensus disorder prediction 471 496 - -
Seca3g01925 540 SMART serkin_6 1 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01925 540 Coils Coil 496 520 - -
Seca3g01925 540 FunFam probable serine/threonine-protein kinase WNK9 6 185 - -
Seca3g01925 540 SUPERFAMILY Protein kinase-like (PK-like) 1 181 IPR011009 -
Seca3g01925 540 Gene3D - 272 375 - -
Seca3g01925 540 ProSitePatterns Serine/Threonine protein kinases active-site signature. 47 59 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01925 Seca-Chr3 33887319 33890771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01925 23 385 MAP Kinase Kinase Kinase AT1G49160 64.738 6.06e-175 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Seca3g01925 Pkinase 9.2e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01925 K08867 - gmx:121175054 790.03