Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01921 ATGGTGAAACACGATCTATGCATAACCGTTCCCACCTACTTCCGTTGCCCTATCTCACTCGATATCATGAAATCCCCTGTTAGCCTCTGCACTGGAGTCACCTACGACCGTTCCAGTATCCAACGCTGGCTAGACGAAGGCCACAATACTTGCCCTGCAACCATGCAGGTCCTTCAAACCAAAGATTTCGTTCCTAACCGCACTTTACAAAGCCTCATCAAGATCTGGACCGAGTCGGTTCGCCAACGGGTCGAACCGCCCGGTTCTAATTCGGTTCCTCCTCGGGACCATGTCCTCCAAGCCATCGCGGACTTGGACTCCAACGGTTCTGACCGGTTCGGTTCATTAAAGAAAGTGGTTCATTTCGCCCAAGATTCTGAACCGAACCGAGTCTTCCTCGCGAAAATTGACAACTTCGTGCCTCTGCTTGTTCGTTTGCTCGACAATGTCGACGACGGCGTTGAGTTTCTCGAACAGGTTGTGAAGGCGTTAGGTTTGATTCTGGATAAAATTGAAGATCGCGAGGGTTTGAAAAACCGTATGTTGAAGGGAGAGAAGCAGCGGTGCTTGGATTCTCTGCTTCTCGTTCTGCAACGAGGAAGCTCTGATTCGAGAATCGCCTCTGCTAGGGTTCTTAAATTCATCGCTGTGGACGTAGAGGCACAGCTTCTGATGGCCGAGAAGGAAGACTTGGTAACCGAATTGCTGAATTTAGCGACGCCAGAGAAAGATTCGGCGTTGATAGAGAGTTGCCTAGCGAGCTTGGTGGCAATCTCTGGGCCCAAACGGAACAAAATGAAGCTGGTAAATCTGGGAGCAATGAAAATGTTATCGAAATTGTTGCTATCGGAATCGAACATGAGTGTGGCGGTGGTGGAGAAGGTGTTGAGGCTTGTGGAAATAGCGACCTCTACTATGGAAGGGAGGAAAGAGATATGCGAGGACGCGGCTTGCGTGGCGGCGATACTAAACAAGGTTCTGAAGGTGTCGAGCATTGCGACGGAGCACGGGGTGACGACGCTATGGAGTTTGTGTTTTCTGTTTCGGGATCGAAAAGCACAGGAAGCGGTTACGCAGGGTAATGGGTTGACAAAGATTTTGTTGTTAATGCAGAGTAATTGTTCCGCTCATGTGCGTCAAATGTGCACTGATTTGCTCAAGATTTTTAGGATTAACTCAAAATCATGCCTCTCTTCTTATGACACTAAGACTACACATATCATGCCCTTTTGA 1233 0.4874 MVKHDLCITVPTYFRCPISLDIMKSPVSLCTGVTYDRSSIQRWLDEGHNTCPATMQVLQTKDFVPNRTLQSLIKIWTESVRQRVEPPGSNSVPPRDHVLQAIADLDSNGSDRFGSLKKVVHFAQDSEPNRVFLAKIDNFVPLLVRLLDNVDDGVEFLEQVVKALGLILDKIEDREGLKNRMLKGEKQRCLDSLLLVLQRGSSDSRIASARVLKFIAVDVEAQLLMAEKEDLVTELLNLATPEKDSALIESCLASLVAISGPKRNKMKLVNLGAMKMLSKLLLSESNMSVAVVEKVLRLVEIATSTMEGRKEICEDAACVAAILNKVLKVSSIATEHGVTTLWSLCFLFRDRKAQEAVTQGNGLTKILLLMQSNCSAHVRQMCTDLLKIFRINSKSCLSSYDTKTTHIMPF. 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01921 410 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Seca3g01921 410 SUPERFAMILY RING/U-box 7 80 - -
Seca3g01921 410 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Seca3g01921 410 PANTHER WDSAM1 PROTEIN 9 398 IPR045185 GO:0061630
Seca3g01921 410 Gene3D - 95 399 IPR011989 -
Seca3g01921 410 SUPERFAMILY ARM repeat 68 394 IPR016024 -
Seca3g01921 410 CDD RING-Ubox_PUB 11 63 IPR045210 -
Seca3g01921 410 Pfam U-box domain 10 79 IPR003613 GO:0004842|GO:0016567
Seca3g01921 410 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Seca3g01921 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 86 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01921 Seca-Chr3 33706466 33707698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01921 1 410 U-box Gene Family AT5G64660 52.257 2.40e-140 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01921 - - gmx:100799627 559.296