Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01915 ATGGGTTCCCTTGCATCTGCTTTAACAGCATTGAATATGGAATTCACTGATGAACTCACCTATTTGCCTGGAATGGCTCCTAGATCTGCTAATGAAGCCACATTAGAAAACGGTGGCATGCAGGTTCTTTCCAAGGAAGATACAGAAACCTTAGAACACTGCAAAGCTATGTCTAAAAGAGGCGAATGCCCTCCCTTTAAGGTCATTTTTGATTCATGTGAAGGCTATACTGTGGTGGCTGATGGCCCAATCAAGGATATGACATTTATTGCTGAATACACTGGTGATGTGGATTATATTAAGAAGCGAGAATCTGATGATGGTGACAGTATGATGACGCTTCTTCTTTCAAGAGATCCTTCTACAAGTCTTGTTATCTGTGCTGATAAACGTGGAAACATTGCCCGCTTCATCAATGGCATCAACAATCATACCCCGGAAGGTAGGAAGAAGCAGAACTGTAAGTGTGTGAGATACAATGTTGATGGAGAATGCCGGGTCTTGTTGGTGGCTACTCGTGACATTGCCAAGGGGGAGAAGCTCTATTATGATTATAATGGTTATGAGCATGAATACCCGACTCAACATTTTGTCTGA 597 0.4238 MGSLASALTALNMEFTDELTYLPGMAPRSANEATLENGGMQVLSKEDTETLEHCKAMSKRGECPPFKVIFDSCEGYTVVADGPIKDMTFIAEYTGDVDYIKKRESDDGDSMMTLLLSRDPSTSLVICADKRGNIARFINGINNHTPEGRKKQNCKCVRYNVDGECRVLLVATRDIAKGEKLYYDYNGYEHEYPTQHFV. 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01915 198 CDD SET_ATXR5_6-like 61 198 - -
Seca3g01915 198 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 25 196 - -
Seca3g01915 198 Pfam SET domain 111 186 IPR001214 GO:0005515
Seca3g01915 198 SUPERFAMILY SET domain 57 186 IPR046341 -
Seca3g01915 198 Gene3D SET domain 1 198 IPR046341 -
Seca3g01915 198 ProSiteProfiles SET domain profile. 64 186 IPR001214 GO:0005515
Seca3g01915 198 SMART set_7 64 192 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01915 Seca-Chr3 33560023 33561170 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca3g01915 SET 1.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01915 K24406 - csin:114285345 350.132