Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01909 ATGATCACCAGAAAACCCACTAAACCCTTCACCTTCCTCCCTATCTCCAGATCCACCCTCCTCATCCTCCTCTCCATGGCATCCCTTCCTTTCTTCTTCTTTCTCCTCTTCCTCTCCCATTCCACCGCCATCCACCACCCAAGGCTCCTCCCTGAACAACAACCCTCCCAGGAGATCCAACAAGCTTGCAAGGCCACTCGTTTCCCTCACCAATGCCATTCCTCTCTCTCCCAATCCAACATCCTCCCCCGCGACGCAACCCCTCTCCAAATAATCCAATCCGCCATGGCAGTTTCCTCTCAAAACCTAGACACCGCTCGATCCATGTTGAGGTCCATCCTGGACGCGTCCGCAGGCAACCGCACCCTCACCAATGCCGCCAAGAACTGCCTCAAGGTTCTCCATTACTCCCATTACCGAACCTCCCACGCCACTGATGCTCTCCCACGTGGCAGGACCAAGGACGCACGTGCCTGGATGAGCGCTGCCTTGGCTTACCAATATGGCTGCTGGTCCGGTCTCAAGAACCATAACCACACCGCGTTGGTTGCTGAAACGATGTCGTTTCTGGACTCCCTCACGGGACTCTCTAGCAATGCCCTCAGCATGATGGTTTCCTATGACATATTTGGAAACGACACCGCTTCCTGGAGGCCTCCACTAACGGAGCGCGACGGGTTCTGGGAGGAGTCCGGGTCGGGTGGTGTCGGGCCTGGACCTTTGTTGCCCGCGAAATTGACGGCGGACGTTACGGTGAGTAAGGATGGGGGCAATGGGTGTTACGGGACGGTGCAGGAAGCGGTTGATGCGGCGCCGGATAATGTTGAGGTAGGGGAACGGAGGTTTGTGATACACATAAAGGAAGGGGTTTATGAGGAGAGGGTTAGGGTTCCGTTGAGGAAGAGGAATGTTGTGTTCTTGGGCGATGGCATGGGTAAGACTGTGATCACAGGCTCTGCAAATGTGGGGCTGCAACCGGGGATGACGACCTATGACTCTGCCACCGTAGGGGTTCTTGGGGATGGATTCATAGCAAAGGATCTCACTTTCCAAAACACGGCTGGTCCTAATGCTCACCAAGCAGTAGCCTTCAGATCAGACAGTGATCTTTCTGTCATTGAGAATTGTGAATTCATTGGCAATCAGGACACACTTTATGCTCATTCCCTGCGCCAATTTTACAAATCTTGCCGTATCCTGGGCAATGTGGACTTCATCTTTGGAAACTCAGCATCAATCTTCCAAGACTGTGAAATCCTAGTCCGGCCCAGGCAAGCCAGGCCTGAGAAGGGTGAGAACAATGCCATTACTGCACATGGCAGGACAGACCCTGCTCAGTCAACAGGGTTTGTTTTCCAGAACTGCTTGATTAATGGTACTGAGGAATATATGGCATTGTATCATAGCAAGCCTAAAGCACACAGGAACTATCTGGGTAGGCCATGGAAGGAGTATTCTAGAACAGTTTTCATTCATTCATTCTTGGAAGTCCTTATCACACCACAGGGTTGGATGCCATGGAGTGGGGATTTTGCACTGAAGACACTTTACTATGGGGAATACGAGAACTCGGGACCAGGTTCTAATTTGACTCAGAGGGTGCCCTGGAGCAACCAGGTCCCAGGTGAGCATGTGTTCACATATTCAGTGCAGAGTTTCATTCAAGGAGATGATTGGATTCATCATCTCAGTAATTAG 1698 0.5183 MITRKPTKPFTFLPISRSTLLILLSMASLPFFFFLLFLSHSTAIHHPRLLPEQQPSQEIQQACKATRFPHQCHSSLSQSNILPRDATPLQIIQSAMAVSSQNLDTARSMLRSILDASAGNRTLTNAAKNCLKVLHYSHYRTSHATDALPRGRTKDARAWMSAALAYQYGCWSGLKNHNHTALVAETMSFLDSLTGLSSNALSMMVSYDIFGNDTASWRPPLTERDGFWEESGSGGVGPGPLLPAKLTADVTVSKDGGNGCYGTVQEAVDAAPDNVEVGERRFVIHIKEGVYEERVRVPLRKRNVVFLGDGMGKTVITGSANVGLQPGMTTYDSATVGVLGDGFIAKDLTFQNTAGPNAHQAVAFRSDSDLSVIENCEFIGNQDTLYAHSLRQFYKSCRILGNVDFIFGNSASIFQDCEILVRPRQARPEKGENNAITAHGRTDPAQSTGFVFQNCLINGTEEYMALYHSKPKAHRNYLGRPWKEYSRTVFIHSFLEVLITPQGWMPWSGDFALKTLYYGEYENSGPGSNLTQRVPWSNQVPGEHVFTYSVQSFIQGDDWIHHLSN. 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01909 565 SMART PMEI_2 54 203 IPR006501 GO:0004857
Seca3g01909 565 Gene3D - 243 564 IPR012334 -
Seca3g01909 565 Pfam Plant invertase/pectin methylesterase inhibitor 58 203 IPR006501 GO:0004857
Seca3g01909 565 CDD PMEI-like_3 62 204 - -
Seca3g01909 565 Pfam Pectinesterase 249 557 IPR000070 GO:0030599|GO:0042545
Seca3g01909 565 FunFam Pectinesterase 243 565 - -
Seca3g01909 565 SUPERFAMILY Pectin lyase-like 247 562 IPR011050 -
Seca3g01909 565 NCBIfam pectinesterase inhibitor domain 28 202 IPR006501 GO:0004857
Seca3g01909 565 Gene3D Invertase/pectin methylesterase inhibitor family protein 54 206 IPR035513 -
Seca3g01909 565 PANTHER PECTINESTERASE 32 561 - -
Seca3g01909 565 FunFam Probable pectinesterase/pectinesterase inhibitor 51 57 206 - -
Seca3g01909 565 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 203 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01909 Seca-Chr3 33524994 33527102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01909 51 559 Carbohydrate Esterase AT5G09760 66.148 0.0 703
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01909 - - gmx:100802102 850.892