Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01907 ATGAGTGGAAGTGGCAGAAAGCGCTCTTCAAAGTGGGATATGAGAGAAGGGTCTGAATTTGCACCTGGTAGTAAGCAATTGCGGTCTGGGTGGTCCTCTGCAGATGTTGCTGGTAGCAATAGTTCGAAATGGTCTTATTCGGAAGGAAATGATAAATTAAAACCTGGTACAGGATTTTCATCCAAGGAATCCTTTTCTGGAGGTAGAGGTTCAAGTAAGGATGATATTATGAATAAAGACTATAGAGTCATGGACGCAACAATGGAATGGGACAATGATGGAAGTTACAGCAAGAAAATGTCTCCTCGGGTTGAGGAAAGGAAACAAAAGAGACACAGTCAATCACCCAAAAATGATTGGAGCAGGAGTCGTAGCAGGAGCCCTCATGGTTTTAGGTGGGATGCAGGAGTCAATGACAGAAATAGAATGAGGGTTGGAGGATCGACACAACCGTGCAGAGATTTTGCTGCTGGTAACTGCAGAAGAGGAAGCCTTTGCAATTTTCTTCATCATGATAATGAAAATCATGAGAATAGTTGGGAAAGTAAGCACCAGGAAGATGGAGATCCCAGATATTCTGCTATGCACGAGAGTAGGGACCATTCTTTTAAGAGTGGCAGATCTAATGAAGCCTGCATTAATTTTGCAAAAGGCAGGTGTAGAATGGGAGCGTCATGCAAGTATGTGCATCATGACAATTCTGATGGATATGGTAAATTTTCTGTGGATGAGTTTGCTAGAGAAAAGGAAACAGATAGAAGGCGCAGAGATAGTTCTTTTGAGCAGGGTGGTGGGCATGGGCCAAACCGCAGTGGTGATACTCCATGCAAATTTTTTGCTAATGGAAATTGTCGTAACGGTAAATATTGTAGGTTTTCTCATGATAGGCAAGCATATAGGAGCCCCAATAGAAGATTAAGGGATGATAGATGGGCAAGCAATCCAGGTGGAGATCATCAGATGCTGGATAGACCAAAATTGAGTGATTCTGTTAGTCCTAATCGAAGGGTAAGAGATGATAGGTGGGGTTCAGATGGCAATATGGCTGATGCAGATAAAGTTAGAGAGAGTCCAAAGCGGAATGATACTAGTGTTGTCTCTGATACAACAAAGCTGGTTGAGGACAAAAGTGGAAATGTAGGTGCTACTGAGCCAGGATTTAGTGCTTGGCCTATGAGGGATGGATGGGGTCATGATTTAGATAAAAGCAGGGTGCATGGCGAACCACCATTTTTTAGTGATAAAAAGGAAGCTGACCATTACATAGCAGAAAATACTGGTGCCAACGTGCACAGTTCCCAGGCAATAGGTACAGATATTTGGTTGGGTGATGCAAAAATGTCTCCTGATTGGAATTATAGGGTGGGATCTTCCAGCCATATTGAAGAGCATGGACAGAATAAGCATGGGATAACCCAGGGCGGTGTGTATGTAGCCACCTCTGAACAGGATAGAGTACAAGTTGCTCCAGGACAAGACTCCAATCAGAATGCACCCAATGTAAATCCTGTGCATTCTTCAAGCTGCCATGCAGTTGGACAAAGTCAAGTTGCAATTCCCATTCTTCCTTCAAGAGGAGGCATTGTTGATAGTGCACCAAAGCAAGAAGTCTCAACAGAGAAAAAATACACCGTTGAGCCAAATATTATGGATGCAGGCTTATCACAAGTTAGTTCAAGAAATCCTCCAACTCAGAACGTGGTAAGCACAGAACAGCTTGCTCAACTTACCAATCTCTCAGCCTCTCTGGTTCATATCCTTGGAACAGGTCAGCAGCTGCCGCAGCTTTATGCTGCTTTAAATTCACATGATCTAAAAGACATTCCTTCCCTAGCAAAAACTGAAGTGCCTGCTATGCCTGTTTCCAATACATTTATCAAGCCAGATCCAGCTGTGGGACTCCCCAAGCAGTATGATCCAATGTGTGATATTGAGCTAAAGAATGCTGATACAAGTGGGGTGCCTCCAGCCATTCCTCCAACTAAAAAAATTGCAGAAGATGAAGCAGAAATTCCATCACAGTTGTCTAACTCAGGAAGACAAAATTGTGGTGATTCTATTAAGACTGCCTCCTCAGAACTTGTCAAGAGTGGTCATCTAATCCAGTTGCAGCCAGGTCAAAACACTGAGGTTAATAAGGATAACAATGAAGTGGTGGCTGAGGAAAGGCAAAATTCTCAAGATGATCATAAAAGTACAAAAGATAATGGTCCTTCGGAAAACGTGGACCAAAATGGCGGGCCTGATGAGGCCAAGAAAACAAAGGATATGAAGGGGATTCGTGCATTTAAATTTGCACTGGTTGAGTTTGTTAAGGAGCTTCTGAAACCAACATGGAAAGAAGGCCAAATCACTAAAGAAGATTATAAAACAATTGTGAAGAAAGTTGTTGATAAAGTAACTAGTACAATGCAGAGCAATATTCCTCAGACACAAGAGAAGATTGACCACTATTTGTCATTTTCAAAACCAAAGCTTAACAAACTTGTACAGGCATATGTGGAAAAAATTCAGAAGGCTTAG 2523 0.4233 MSGSGRKRSSKWDMREGSEFAPGSKQLRSGWSSADVAGSNSSKWSYSEGNDKLKPGTGFSSKESFSGGRGSSKDDIMNKDYRVMDATMEWDNDGSYSKKMSPRVEERKQKRHSQSPKNDWSRSRSRSPHGFRWDAGVNDRNRMRVGGSTQPCRDFAAGNCRRGSLCNFLHHDNENHENSWESKHQEDGDPRYSAMHESRDHSFKSGRSNEACINFAKGRCRMGASCKYVHHDNSDGYGKFSVDEFAREKETDRRRRDSSFEQGGGHGPNRSGDTPCKFFANGNCRNGKYCRFSHDRQAYRSPNRRLRDDRWASNPGGDHQMLDRPKLSDSVSPNRRVRDDRWGSDGNMADADKVRESPKRNDTSVVSDTTKLVEDKSGNVGATEPGFSAWPMRDGWGHDLDKSRVHGEPPFFSDKKEADHYIAENTGANVHSSQAIGTDIWLGDAKMSPDWNYRVGSSSHIEEHGQNKHGITQGGVYVATSEQDRVQVAPGQDSNQNAPNVNPVHSSSCHAVGQSQVAIPILPSRGGIVDSAPKQEVSTEKKYTVEPNIMDAGLSQVSSRNPPTQNVVSTEQLAQLTNLSASLVHILGTGQQLPQLYAALNSHDLKDIPSLAKTEVPAMPVSNTFIKPDPAVGLPKQYDPMCDIELKNADTSGVPPAIPPTKKIAEDEAEIPSQLSNSGRQNCGDSIKTASSELVKSGHLIQLQPGQNTEVNKDNNEVVAEERQNSQDDHKSTKDNGPSENVDQNGGPDEAKKTKDMKGIRAFKFALVEFVKELLKPTWKEGQITKEDYKTIVKKVVDKVTSTMQSNIPQTQEKIDHYLSFSKPKLNKLVQAYVEKIQKA. 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01907 840 Gene3D - 265 322 - -
Seca3g01907 840 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 149 171 IPR000571 GO:0046872
Seca3g01907 840 ProSiteProfiles Zinc finger C3H1-type profile. 146 173 IPR000571 GO:0046872
Seca3g01907 840 MobiDBLite consensus disorder prediction 322 362 - -
Seca3g01907 840 ProSiteProfiles Zinc finger C3H1-type profile. 270 297 IPR000571 GO:0046872
Seca3g01907 840 MobiDBLite consensus disorder prediction 73 87 - -
Seca3g01907 840 Pfam RNA-binding, Nab2-type zinc finger 211 230 - -
Seca3g01907 840 ProSiteProfiles Zinc finger C3H1-type profile. 206 233 IPR000571 GO:0046872
Seca3g01907 840 MobiDBLite consensus disorder prediction 25 48 - -
Seca3g01907 840 MobiDBLite consensus disorder prediction 715 737 - -
Seca3g01907 840 MobiDBLite consensus disorder prediction 175 205 - -
Seca3g01907 840 MobiDBLite consensus disorder prediction 1 137 - -
Seca3g01907 840 SMART c3hfinal6 207 232 IPR000571 GO:0046872
Seca3g01907 840 SMART c3hfinal6 146 172 IPR000571 GO:0046872
Seca3g01907 840 SMART c3hfinal6 270 296 IPR000571 GO:0046872
Seca3g01907 840 MobiDBLite consensus disorder prediction 702 755 - -
Seca3g01907 840 MobiDBLite consensus disorder prediction 246 261 - -
Seca3g01907 840 MobiDBLite consensus disorder prediction 301 369 - -
Seca3g01907 840 MobiDBLite consensus disorder prediction 246 276 - -
Seca3g01907 840 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 839 - -
Seca3g01907 840 Pfam CCCH-type zinc finger 275 295 IPR041367 -
Seca3g01907 840 MobiDBLite consensus disorder prediction 96 137 - -
Seca3g01907 840 Gene3D - 144 242 - -
Seca3g01907 840 SUPERFAMILY CCCH zinc finger 273 295 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01907 Seca-Chr3 33478611 33483930 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca3g01907 zf-CCCH 1.7e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01907 - K22909 gmx:100783856 1281.16