Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01906 ATGGATTTCAATCAGAACACCACCACTACTTCTACAACTACATTCACAAATGTTAACAGCACTTGGAATCTTGATGAGAAGATGGAAACAGGTCATCATCAACATAGCACAATTCTCCATCATCAAATTCCAATGGATTCTGGAATTAATTGGCCAAACTATCACCATCCTCTTCAGATATCATCTTCATCCAGTGTAGTAGTACCCTCTGCTTCTCCTTCAGGTTTCTTGAATGACATATTAGGCACTCACTTTGAAGAAGATGAAGAGGCGGAAGAGGAGTTAGGAGCCATGAAGGAAATGATGTACAAAATCGCTGCTATGCAGCCTGTGGATATCGATCCTGCAACCATCAGAAAACCAAAGAGGAGAAATGTTCGCATAAGCGATGATCCACAGAGTGTGGCTGCACGTCACAGGCGTGAGAGGATAAGTGAGAAAATCCGAATCCTTCAAAGACTCGTCCCTGGTGGAACCAAAATGGACACTGCTTCTATGCTTGATGAAGCCATTCGCTATGTCAAATTCCTAAAGAGACAAATCAGGTTGCTTCAATCAACTCCTCCACATTCCCAACAACCACCAAATTGCATTGTTACTCCTGCTCCTAATCCTAACGGTTTATTGTTAGCCACAAGCGGTTATTGGCCTGCTTTTGCACCGAATATAACTGCCACCACTACTACTACTCCCTCTTCCTCCATGGATTTGCCAGCTGGAGTGGAATTCAACACCAGAGGACATGGTGATGGCTCATCCTGTTTTAGCCATCATGAGGTAATTAGTGATTAA 792 0.4318 MDFNQNTTTTSTTTFTNVNSTWNLDEKMETGHHQHSTILHHQIPMDSGINWPNYHHPLQISSSSSVVVPSASPSGFLNDILGTHFEEDEEAEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSTPPHSQQPPNCIVTPAPNPNGLLLATSGYWPAFAPNITATTTTTPSSSMDLPAGVEFNTRGHGDGSSCFSHHEVISD. 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01906 263 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 133 190 IPR036638 GO:0046983
Seca3g01906 263 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 20 206 IPR045843 GO:0003700|GO:0006355
Seca3g01906 263 FunFam BHLH transcription factor 131 194 - -
Seca3g01906 263 Pfam Helix-loop-helix DNA-binding domain 138 177 IPR011598 GO:0046983
Seca3g01906 263 Gene3D - 131 193 IPR036638 GO:0046983
Seca3g01906 263 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 128 177 IPR011598 GO:0046983
Seca3g01906 263 CDD bHLH_AtIND_like 129 186 - -
Seca3g01906 263 SMART finulus 134 183 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01906 Seca-Chr3 33451805 33453322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01906 97 208 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 74.107 1.13e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g01906 HLH 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01906 - - gmx:100777351 299.286