Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01901 ATGGAGAATGAGAATGGGGTTAGCATTACAAGGTCTCAAAACAAAGAGAGACTTGCTATTTTGGAACTAGCCCACATGATGAGTGTCCCAATGTCTCTCATAGCCGTACTCAATCTCAAGGTCCCCGACGCCATTTGGCAAGATGGTTCCAACATACCACTCTCAGCCTCTCAGATTCTTGCCATCGTTCGTCCCCATGATGGTGGCGACGCCGAGAATCTCCAGCGCATCCTCCGCTTGCTCACCACTTATGACATTTTCATTGAGCACTTGAGCAGCAGTGGCGAAAGGAAATACTCCCTCACTAACATAGGCAAAACTCTTGTCCCCAATCATGAAGGTCTATCCTACGGACCTTACTTCCTCCAACACCATCAGGATGCATTGATGAGAACATGGCCGTTGGTGGAGGAGGCGGTGAAGGATCCCGAGACAGAGCCATTCATAAAGGTGAATGGAGAGTCAGCGTATCCGTATTACGAGAAACGCCCAAATGAAAACACTTTGTATTGTAAAGCCGTGGCTGGGATGTCGATTCCCCATATAAGAGAAATGTTGGAGCTCTATGATGGTTTCCGAGGGGTGGAGACACTTGTTGATGTTGGTGGCAATATTGGTGTCTGTCTCCGTATGATCATGGAGAAGTACCCTACCATACGCAAGGGCATTAACTATGATTTTCCTCAGATGGTGGCCTCTGCGCCACACATTCCAGGTGACAAATCTCGTCAAATATTGCTGTGA 744 0.4785 MENENGVSITRSQNKERLAILELAHMMSVPMSLIAVLNLKVPDAIWQDGSNIPLSASQILAIVRPHDGGDAENLQRILRLLTTYDIFIEHLSSSGERKYSLTNIGKTLVPNHEGLSYGPYFLQHHQDALMRTWPLVEEAVKDPETEPFIKVNGESAYPYYEKRPNENTLYCKAVAGMSIPHIREMLELYDGFRGVETLVDVGGNIGVCLRMIMEKYPTIRKGINYDFPQMVASAPHIPGDKSRQILL. 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01901 247 Gene3D - 4 113 IPR036388 -
Seca3g01901 247 Pfam O-methyltransferase domain 136 237 IPR001077 GO:0008171
Seca3g01901 247 Gene3D Vaccinia Virus protein VP39 114 244 IPR029063 -
Seca3g01901 247 SUPERFAMILY "Winged helix" DNA-binding domain 15 111 IPR036390 -
Seca3g01901 247 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 21 247 IPR016461 GO:0008168
Seca3g01901 247 PANTHER O-METHYLTRANSFERASE 23 241 IPR016461 GO:0008168
Seca3g01901 247 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 114 237 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01901 Seca-Chr3 33370145 33373272 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01901 1 239 Monolignol Biosynthesis Gene Families AT3G53140 56.790 4.89e-95 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01901 - - ccaj:109819366 322.398