Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01900 ATGGAGAATGGAAAGGTAGTGAGCATTGCAAGGTCTCAAAGCAAAGAGAGACTTGCCATTTTGGAACTAGCCCATATGATGAGTGTCCCAATGTCCCTCACTGCAGTCCTCAATCTCAACGTCCCTGACGCCATCTGGCAAGCTGGTTCCAATATTCCACTCTCCGCCTCTCAAATCCTTGCCATTGTTCGTCCCCACGGCGACGGCGACGCCGACAACCTCCAGCGCATCCTCCGCTTGCTCGCCACTTATGACATTTTCACTGAGCACTTGAGCAACAGTACTGGCGAACGAGAATACTCCCTCACTGACGATGCATTGATACGAGCATGGCCGTTGGTGGAGGAGACGGTGAAGGATCCAAGGACGGAGCCATTCAAGAAGGCGAACGGAGAGTTAGCAATAGAGTACTACATGAAACGACCAGATGCAATAAGTTTGATTTATAAGGCAATGGCTGGGATGTCGGTGCCCTTTATGAGAGAAATGTTGGAGCTCTATGACTATGATGGCTTCCGAGGGGTGGGGACACTAGTTGACGTTGGTGGCAATTCTGGTGTTTGTCTCGGCATGATCATGAACAAGTACCCTAGTATACGCAAGGGCATCAACTATGATCTGCCTGATATGCTGGCCTCTGCACCACACATCCAAGGTCACTATTATTTTCCTTAA 675 0.4963 MENGKVVSIARSQSKERLAILELAHMMSVPMSLTAVLNLNVPDAIWQAGSNIPLSASQILAIVRPHGDGDADNLQRILRLLATYDIFTEHLSNSTGEREYSLTDDALIRAWPLVEETVKDPRTEPFKKANGELAIEYYMKRPDAISLIYKAMAGMSVPFMREMLELYDYDGFRGVGTLVDVGGNSGVCLGMIMNKYPSIRKGINYDLPDMLASAPHIQGHYYFP. 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01900 224 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 21 224 IPR016461 GO:0008168
Seca3g01900 224 Gene3D - 2 102 IPR036388 -
Seca3g01900 224 Gene3D Vaccinia Virus protein VP39 103 222 IPR029063 -
Seca3g01900 224 Pfam Dimerisation domain 31 82 IPR012967 GO:0046983
Seca3g01900 224 PANTHER O-METHYLTRANSFERASE 23 214 IPR016461 GO:0008168
Seca3g01900 224 Pfam O-methyltransferase domain 114 216 IPR001077 GO:0008171
Seca3g01900 224 SUPERFAMILY "Winged helix" DNA-binding domain 15 104 IPR036390 -
Seca3g01900 224 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 101 216 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01900 Seca-Chr3 33289391 33291084 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01900 10 219 Monolignol Biosynthesis Gene Families AT3G53140 48.101 1.33e-68 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01900 - - ccaj:109819366 261.151