Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01896 ATGGAGAATGAGAATGGGGTTAGCATTACAAGGTCTGAAAACAAAGAAAGACTTGCCATTTTGGAACTAGCTCACATAATGAGTGTCCCAATGTCTCTCATAGCAGTCCTCAATCTCAAGGTCCCCGACGCCATTTGGCAAGATGGTTCCAACATACCACTCTCAGCCTCTCAGATTCTTGCCATCGTTCGTCCCCATGATGGTGGCGACGCCGAGAATCTCCAGCGCATCCTCCGCTTGCTCACCACTTATGACATTTTCATTGAGCACTTGAGCAGCAATGGCGAAAGGAAATACTCCCTCACTAACATAGGCAAAACTCTTGTCCCCAATCATGAAGGTCTTTCCTACGGACCTTACTTCCTCCAGCATCATCAGGATGCATTGATGAGAACATGGCCGTTGGTGGAGGAGGCGGTGAAGGATCCAGGGACGGAGCCATTCATAAAGGTGAATGGAGAGTCAGCGTTTCCTTATTATGAGAAACGCCCAAATGAAAACACTTTGTATTGTAAGGCCGTGGCTGGGATGTCGATTCCCCATATAAGAGAAATGTTTGAGCTCTATGATGGTTTTCAAGGGGTGGAGACACTAGTTGATGTTGGTGGCAATTCTGGTGTGTGTCTCCGCATGATCATGGAGAAATACCCTACCATACGCAAGGGCATTAACTATGATTTTCCTCATATGGTGGCCTCTGCGCCACACATTCCAGGTGACAAATCTCGTCAAAGATAG 738 0.4715 MENENGVSITRSENKERLAILELAHIMSVPMSLIAVLNLKVPDAIWQDGSNIPLSASQILAIVRPHDGGDAENLQRILRLLTTYDIFIEHLSSNGERKYSLTNIGKTLVPNHEGLSYGPYFLQHHQDALMRTWPLVEEAVKDPGTEPFIKVNGESAFPYYEKRPNENTLYCKAVAGMSIPHIREMFELYDGFQGVETLVDVGGNSGVCLRMIMEKYPTIRKGINYDFPHMVASAPHIPGDKSRQR. 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01896 245 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 21 245 IPR016461 GO:0008168
Seca3g01896 245 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 114 237 IPR029063 -
Seca3g01896 245 Gene3D - 4 113 IPR036388 -
Seca3g01896 245 PANTHER O-METHYLTRANSFERASE 27 240 IPR016461 GO:0008168
Seca3g01896 245 SUPERFAMILY "Winged helix" DNA-binding domain 13 111 IPR036390 -
Seca3g01896 245 Gene3D Vaccinia Virus protein VP39 114 243 IPR029063 -
Seca3g01896 245 Pfam O-methyltransferase domain 136 237 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01896 Seca-Chr3 33208329 33214262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01896 1 239 Monolignol Biosynthesis Gene Families AT3G53140 54.694 2.68e-91 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01896 - - ccaj:109819366 325.479