Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01891 ATGGCCGAAACAAAATTGATTCCAGGGTTTCGGTTTCATCCCACTGACGTTGAGCTGGTTAAGTACTTTCTGAAGAGGAAGGTTCTGGGTCGAAAATTCCCTTTTGATGTCATTGCTGAAATTGACATATACAAGTATGCTCCGTGGGATCTCCCAGATAAATCTTTGCTCAGAACTGGGGATTTAGAATGGTACTTCTTTTGCCCTCGTGGAAAGAAATATTCCAGTGGAGGGAGGATGAATCGGGCAACGGAAACTGGGTACTGGAAGACTACTGGGAAGGATAGGTCAATTGAACACAAAAACCAAGTCGTGGGGATGATAAAAACCCTGGTATTTCACACTGGCAGAGCCCCTAAGGGAGACCGAACTGATTGGGTCATGCATGAATTCAGACTTGAAGACAAGGACCTTACTGCCAAAGGCATTCCACAGGATTCCTATGTGATTTGTAGGGTATTCCAGAAGGAAGGTCCTGGTCCCAGGAATGGTGCACAATATGGAAAGCCATTTAATGAGGAAGACTGGGACGAAGAGGAAATTGGTTGTGTCCAAACTGTCCCTCTTGCTGCTATATCTCCACAAGTTCCCATTCTACCTAGTGCAAGTCATATTTCTGTTGCAAATGACATGCATCCCTCTAAAATTGGATGCATTGGATTGACCTCTGTATCATGTCTATCAGGATTGATGCCGTCTTGCTCAGCAGATCCTTCAGCTCCAAGCAATCAAGTTGATAACAGCATTTTATCTATGCTTGACTTATTCAAAGAAGATGATAACGCATTGGCTGTGAATGAAAGCAATGGAATCAAGGATGTTGATAATCCTGGTCAGGCAAATGATGCTGAGGGCGCACCTTCTTTAGATCCAAATAAGATTTTTGAGGACTTAGGAGACCTTGACGGCGTTGGATTAGGTGAAGGACACGGGTTTTCCTGGGGCCAAAAAGATGAATCTACTACAAACGGAATGCTTTCTACATGCGATGCCTCGGGGTCTTGGGACCCCCAAGACTTCTTGGAGTTGAATGACCTAGAGGTGCCATTGTTATGGCAGACTAAACAAGATGGAAGTTAG 1080 0.4444 MAETKLIPGFRFHPTDVELVKYFLKRKVLGRKFPFDVIAEIDIYKYAPWDLPDKSLLRTGDLEWYFFCPRGKKYSSGGRMNRATETGYWKTTGKDRSIEHKNQVVGMIKTLVFHTGRAPKGDRTDWVMHEFRLEDKDLTAKGIPQDSYVICRVFQKEGPGPRNGAQYGKPFNEEDWDEEEIGCVQTVPLAAISPQVPILPSASHISVANDMHPSKIGCIGLTSVSCLSGLMPSCSADPSAPSNQVDNSILSMLDLFKEDDNALAVNESNGIKDVDNPGQANDAEGAPSLDPNKIFEDLGDLDGVGLGEGHGFSWGQKDESTTNGMLSTCDASGSWDPQDFLELNDLEVPLLWQTKQDGS. 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01891 359 FunFam Nac domain-containing protein 86 15 159 - -
Seca3g01891 359 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 231 - -
Seca3g01891 359 MobiDBLite consensus disorder prediction 315 330 - -
Seca3g01891 359 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Seca3g01891 359 MobiDBLite consensus disorder prediction 309 330 - -
Seca3g01891 359 Gene3D NAC domain 15 158 IPR036093 GO:0003677|GO:0006355
Seca3g01891 359 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
Seca3g01891 359 MobiDBLite consensus disorder prediction 268 291 - -
Seca3g01891 359 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01891 Seca-Chr3 33121426 33129322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01891 1 354 NAC Transcription Factor Family AT5G09330 44.619 6.09e-97 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca3g01891 NAM 9.3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01891 - - adu:107470479 487.648