Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01887 ATGTATGCGAGGGCAAATGAGTTTTCTATTCTCAATAGTTCAAAGCTTAGATACAAGACAAAACACGTGACACAACAAACTTTCTTTTGTAACCGCCAAGGTTATAGAGAGAATAGAGGTTTGACAAAGGAAGCACGAAAACGAGAACAAAAACAACATACTCGATGCGAGTGTCTAGCTTTATTCCAAGTTCATGTTGACTCTGAATCTGGTAGATGGTATGTGACACGGTTTAATGACAATCACAATTATGAGCAGTTGTCTCATAATTATTGTGGGATGCTTCCTGGGCATAAAAGAACGATTAAGGGTGACATTTTACAAATGAATAATTTGAGGAAAGTTAGCATCAAGTTCTGCATATATACGGATCCTTTGCTAGACAGTGCGGTGGGTATTCAAGGATAG 408 0.3799 MYARANEFSILNSSKLRYKTKHVTQQTFFCNRQGYRENRGLTKEARKREQKQHTRCECLALFQVHVDSESGRWYVTRFNDNHNYEQLSHNYCGMLPGHKRTIKGDILQMNNLRKVSIKFCIYTDPLLDSAVGIQG. 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01887 135 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 2 100 - -
Seca3g01887 135 Pfam FAR1 DNA-binding domain 2 85 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01887 Seca-Chr3 33110001 33110408 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g01887 FAR1 2.1e-14 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01887 - K17604 mtr:112420123 122.479