Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01882 ATGCCCACTTGGTGGGGTAGAAAATCCAGCAAGAGCAAGGACCAGGTGCAGGAAGAGGAAGCACGTGGTGGTAGTGGTGGCGGCGGTGGCGTGCTTCAATTCAATTTCATCAAGAACGCTGCAAAGAAAGGGAAAGGTGAAAGGCCTAAGAGTTTTGACGATGCTGCTAGGAATTCTCCAAGGGCAAGCAGGGATTTCTCTTCTTCTTCTGCTTGCTTTGATTCTGATGGCGGCGAGAAGAGAGGCCTTCCTTTGCCTCGACCCTCTGTTTCTTCCACCCAAAGCTTTGGCAACGATCAGGGTCTTGTTTTCGGATCTGCTTCCGTTTCTGGTTCTAGCGTTAGTTCCACTGGCTCCTATGATGATCATCCAACCTATCACTCTCAGATTAATGGCTCAAGAGGACAAGGTGACTTGAAGTTCAATGTGAGGTCTAAAAGCCCAGGTCCTGGATCAAGAGGGCCAACCAGCCCTACATCACCTCTTCATCCAAGGTTGCATGTTTTGAGTCTTGACTCCCCTACAGGCAGGCAAGAAGATGGAAGGAGTCAATGTCATCCATTGCCTCTTCCACCAGGCTCTCCTACTAGTCCTTCTTCTCTTTCCAACACAAGAGCAAATGGACAGCTAGAAAACACTACCGGTAACATTTGCAAGTGGAAGAAAGGAAAGCTCTTAGGACGGGGAACATTTGGGCATGTTTACCTGGGATTCAATAGTGAAAGTGGACAATTGTGTGCAATTAAAGAAGTAAGGCTTGTCTCTGATGATCAAACATCAAAAGAGTGCCTCAAACAACTTAATCAGGAGATTCATTTGCTTCGTCAGCTTTTACATCCAAACATTGTTCAATACTATGGGAGTGATTTGGGAGAAGAAGCACTTTCTGTTTATTTGGAATATGTCTCTGGCGGTTCTATTCATAAATTACTTCAGGAATATGGGCCCTTTAAGGAGCCTGTAATTCAAAATTATACCAGGCAGATTGTCTCTGGACTTTCCTATCTACATGGGAGAAATACAGTGCATAGGGATATCAAAGGGGCCAACATACTAGTTGATCCTAATGGCGAAATTAAGCTTGCGGACTTTGGAATGGCTAAACATTTTGTTGTGAAACAGATAAATTCTTCTGCCTCAATGCTTTCTTTCAAAGGAAGTCCATACTGGATGGCACCTGAGGTTGTAATGAATACAAATGGCTATAGTCTTCCTGTTGATATATGGAGCTTGGGATGCACAATTCTTGAAATGGCAACATCGAAGCCTCCATGGAATCAATATGAAGGGGTGGCTGCAATATTTAAAATTGGTAACAGCAAAGATATGCCAGAAATTCCTGATCACCTCTCAAATGATGCGAAGAATTTCATTATGCTATGCTTACAAAGAGATCCATCAGCTCGCCCAACAGCCCAAATGTTACTAGATCACCCCTTTATTCGAGATCAGTCAGCAACAAAAGCTACAAATGTCAGAATAACAAGGGATGCTTTTCCCTACATGTTTGATGGAAGCCGGACACCACCGCCAGTTTTAGAGCATCATTCCAATAGAACAAGTATAACTTCACTGGATGGAGATTATGCAACAAAGCCAGCTATTGCAGCTTCACGAGCAATAAGAAGCCCAAGAGATAACACAAGAACGATCACATCTTTACCAGTGTCACCCTGTTCAAGTCCATTACGACAGTATGGGCCAGCACACAAGAGCTGTTTCCTTTCTCCCCCTCATCCAACTTACACAATGATGGGACAACACACCCTCTCCTCATATCCATTGAGATCAAATGCCAATACCACGTTCACACTTGATCCTTGGCATGAAACATCTTTATACAAACCCCACACACCCGGTGGATCCCCAAGAACGAGACTCATTTGA 1887 0.4414 MPTWWGRKSSKSKDQVQEEEARGGSGGGGGVLQFNFIKNAAKKGKGERPKSFDDAARNSPRASRDFSSSSACFDSDGGEKRGLPLPRPSVSSTQSFGNDQGLVFGSASVSGSSVSSTGSYDDHPTYHSQINGSRGQGDLKFNVRSKSPGPGSRGPTSPTSPLHPRLHVLSLDSPTGRQEDGRSQCHPLPLPPGSPTSPSSLSNTRANGQLENTTGNICKWKKGKLLGRGTFGHVYLGFNSESGQLCAIKEVRLVSDDQTSKECLKQLNQEIHLLRQLLHPNIVQYYGSDLGEEALSVYLEYVSGGSIHKLLQEYGPFKEPVIQNYTRQIVSGLSYLHGRNTVHRDIKGANILVDPNGEIKLADFGMAKHFVVKQINSSASMLSFKGSPYWMAPEVVMNTNGYSLPVDIWSLGCTILEMATSKPPWNQYEGVAAIFKIGNSKDMPEIPDHLSNDAKNFIMLCLQRDPSARPTAQMLLDHPFIRDQSATKATNVRITRDAFPYMFDGSRTPPPVLEHHSNRTSITSLDGDYATKPAIAASRAIRSPRDNTRTITSLPVSPCSSPLRQYGPAHKSCFLSPPHPTYTMMGQHTLSSYPLRSNANTTFTLDPWHETSLYKPHTPGGSPRTRLI. 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01882 628 SMART serkin_6 220 481 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01882 628 Pfam Protein kinase domain 221 481 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01882 628 ProSiteProfiles Protein kinase domain profile. 220 481 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01882 628 ProSitePatterns Protein kinases ATP-binding region signature. 226 249 IPR017441 GO:0005524
Seca3g01882 628 CDD STKc_MEKK1_plant 219 481 - -
Seca3g01882 628 MobiDBLite consensus disorder prediction 87 140 - -
Seca3g01882 628 MobiDBLite consensus disorder prediction 41 60 - -
Seca3g01882 628 SUPERFAMILY Protein kinase-like (PK-like) 219 562 IPR011009 -
Seca3g01882 628 MobiDBLite consensus disorder prediction 1 210 - -
Seca3g01882 628 Gene3D Transferase(Phosphotransferase) domain 1 218 501 - -
Seca3g01882 628 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 76 489 - -
Seca3g01882 628 FunFam Mitogen-activated protein kinase kinase kinase 218 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01882 Seca-Chr3 32946406 32952498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01882 1 545 MAP Kinase Kinase Kinase AT1G53570 58.887 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca3g01882 Pkinase 1.6e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01882 K04421 - gmx:100813122 968.763