Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01874 ATGAATCTCAATCTCCCTTCTCTGTCTCTCACGCGCTTCCCTGAGCGTCTTGTTGCTCCTCTTTGTTCTTCAGTTCCTACAACCGCTACCAGGGGCAATAGCGTGGAGAGTATTGCAATTGAAGGCCGTAATCTGAATTTCTCATTCAAGGCGAGGCAAACAAAGGACGTGCAAGTTCTTAAGGATTGTTCACTTCGCATTCCTTCTGGGCAGTTTTGGATGCTTCTTGGACCTAATGGGTGTGGAAAATCAACCCTCTTGAAGATTTTGGCTGGTCTCTTGACTCCAACTTCTGGAACAGTGTACGTGAATGAGCCTAAAAGTTTTGTTTTCCAAAATCCAGATCATCAGGTGGTGATGCCTACAGTAGATGCTGATGTTGCATTTGGTCTTGGTAAAATCAATTTAACCCAGGATGAAGTCAGATCTAGGGTGTCTCAAGCTCTGCATGCTGTTGGCCTGTCTGACTACATGAAGGTATTATGGACTACAACCTTGAACACTAAAATAAATGTGTGA 519 0.4412 MNLNLPSLSLTRFPERLVAPLCSSVPTTATRGNSVESIAIEGRNLNFSFKARQTKDVQVLKDCSLRIPSGQFWMLLGPNGCGKSTLLKILAGLLTPTSGTVYVNEPKSFVFQNPDHQVVMPTVDADVAFGLGKINLTQDEVRSRVSQALHAVGLSDYMKVLWTTTLNTKINV. 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01874 172 CDD ABC_cobalt_CbiO_domain1 41 159 IPR015856 GO:0005524|GO:0016020|GO:0055085
Seca3g01874 172 Pfam ABC transporter 60 156 IPR003439 GO:0005524
Seca3g01874 172 PANTHER ABC TRANSPORTER I FAMILY MEMBER 10 40 159 - -
Seca3g01874 172 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 161 IPR027417 -
Seca3g01874 172 Gene3D - 35 168 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01874 Seca-Chr3 32884842 32888303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01874 40 104 Calmodulin-binding Proteins AT2G36910 35.385 2.64e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01874 - - gmx:100813654 257.299