Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01870 ATGGGAAGATCAAGCAGCAGCAGTAACAGTGAGAGTAAAAAAAGTTGCAATAGAGGCCATTGGAGACCCTGTGAAGATGAGAGACTAAGACAACTTGTGAAGCAATATGGTCCTCAGAATTGGAATTTCATTTCTGAACACCTTGAAGGAAGATCAGGGAAAAGTTGCAGGTTGAGGTGGTACAATCAACTAGACCCAAATATAATTAGAAATCCATTCACTGATGAAGAGGAAGAAATGCTCCTAGCACTTCACAAAGTCAAGGGAAACAAATGGGCTGCAATAGCTAGATTTTTCCCTGGAAGAACAGACAATGCTGTGAAGAATCACTTCCATGTGTTAATGGCCAGAAGGAAGAGAGAGTGCTTGGCATTGTTTGGTAATAACACAATTGGCCATAATTCAAGGATTAATTTTAACTTACAAAACTATAAAAACACAGGAATATTTGGTATGCAGTCTACCTCACAGACATCAACTCCTTATTGGAGTAGTAGCATTAGCAAGGCTCACAAAGACTCAATGTTTTCTTCAAGTGCTGGAGAGAAACCACATGATTTGAACCATTTTCCTTCAGGTGTAGGTTCTTCTTTTCTTGGCAGTTACAACAGTTTCACTGCCCCTGGACTTCCAAGTATTGGCAAGGTTGTTCCCCTTTCACATAAGTTCTTAAACTCTAATTATGGCCACAGAACTGAGGACTCCAACAAAGGTAAGCATCCACATGATAATTCCATGGCACTGTGTAAGTTGACTATGAATAGTACTCAAGAGCAAGAACAAACTGAACCTCTTAATCTCAAGCAAAAGGGTGTTTCTTCCTTCATAGACTTTCTTGGTGTAGGAAGTTCTCATGCCAGTGATGACAGTATTGGTGGACCATGA 885 0.4011 MGRSSSSSNSESKKSCNRGHWRPCEDERLRQLVKQYGPQNWNFISEHLEGRSGKSCRLRWYNQLDPNIIRNPFTDEEEEMLLALHKVKGNKWAAIARFFPGRTDNAVKNHFHVLMARRKRECLALFGNNTIGHNSRINFNLQNYKNTGIFGMQSTSQTSTPYWSSSISKAHKDSMFSSSAGEKPHDLNHFPSGVGSSFLGSYNSFTAPGLPSIGKVVPLSHKFLNSNYGHRTEDSNKGKHPHDNSMALCKLTMNSTQEQEQTEPLNLKQKGVSSFIDFLGVGSSHASDDSIGGP. 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01870 294 Gene3D - 18 69 - -
Seca3g01870 294 ProSiteProfiles Myb-like domain profile. 13 64 IPR001005 -
Seca3g01870 294 MobiDBLite consensus disorder prediction 1 20 - -
Seca3g01870 294 SUPERFAMILY Homeodomain-like 17 111 IPR009057 -
Seca3g01870 294 FunFam MYB transcription factor 18 69 - -
Seca3g01870 294 Pfam Myb-like DNA-binding domain 21 81 - -
Seca3g01870 294 CDD SANT 21 62 IPR001005 -
Seca3g01870 294 CDD SANT 72 115 IPR001005 -
Seca3g01870 294 Gene3D - 71 145 - -
Seca3g01870 294 PANTHER MYB PROTEIN-RELATED 18 226 - -
Seca3g01870 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 119 IPR017930 -
Seca3g01870 294 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Seca3g01870 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 68 IPR017930 -
Seca3g01870 294 SMART sant 69 117 IPR001005 -
Seca3g01870 294 SMART sant 17 66 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01870 Seca-Chr3 32823099 32824769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01870 1 173 MYB Transcription Factor Family AT4G33450 54.450 9.96e-66 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca3g01870 Myb_DNA-bind_6 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01870 K09422 - tcc:18611869 229.18