Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01858 ATGAAGAAACAAGGGTGTGAGATTGAGGCGACAGGCGTCAACTACAAGATCCACACACAGACAACAGAACAATCTTTTAAAATTTTCAACAAACCTCCACAGTTTCATAGTGAAGAAGATGGTGAGGAACCAGGAAATGAAGCAAAAGCTGAACAAAGATCATGTAGTGGAGTTAAGCATGTCCTGAAGGATGTGAATTGCACTGCTAAGCCAAGGCAAATTCTGGCAATTGTTGGGCCAAGTGGAGCAGGAAAATCATCCCTGCTTGAGATTCTTGCTGGTAAAGTTAGTCCACAAAGTGGGTCTATCTTGGTGAACCAGGAGCCTGTAGATAAAGCTCAGTTTAGGAAGATATCAGGGTATGTTACACAAAAGGATACCCTGTTTCCCTTACTTACGGTTGAAGAAACCATCATGTTTAGTGCAAAGTTAAGGTTAAATCTTCCTCAACAACAACTATGCTCCAGGGTGAAGTCACTGATTCAGGAGCTTGGTCTTAGCCATGTTGCTAGGACTAGAGTTGGAGATGAAAGGGTCAGAGGAATATCTGGTGGTGAGATGCGACGAGTTTCCATTGGTGTGGAAGTTGTCCATGATCCAAAGGTGCTGATTTTGGATGAAGCAACTTCAGGGCTTGACAGTACCTCAGCTCTGCAAATAGTTGATATGCTTAAAGTCATGGCTGAATCTAAGGGAAGAACTATAATCTTAAGTATCCATCAACCTGGTTTCAGAATAGTGAAGTTGTTAAATTCAATACTGTTGTTAGCCAATGGCTACGTGTTACATCATGGTACTGTGGATTTGCTGGGTGTAAATCTAAGGTTAATGGGTTTAGAGCTTCCTCTACATGTTAATGTAGTTGAGTTTGCCATTGAATCCATTGAGACCATTCAACAACAACAAAAATGTCAGCAAGCTCAGCTAGAAGCACCACTACAACGATTACCAGGGAGAATGCAACAAAAGAAAGGTGATGATCAAGGTCAAAGTAGAAGTGGTAAGTTCACTCTGCAACAGCTCTTTCAACAATCCAAGGTAATTGATGTGGAAATCATCAATATGGGAATGGATTTCACTCGTGATTTTACTAATTCTAGATTGAGAGAAACTATGATTCTCACTCATAGGTTTTCCAAAAACATCTTTCGTACAAAGGAGCTCTTTGCATGTAGGACAATTCAGATGCTGATTTCTGGGCTGGTTTTGGGCACTGTCTTTTGTCATCTCAAGGATGGTGTAGAGGGAGCAGAAGAAAGGGTGGGTCTATTTGCTTTCATTTTATCATTTTTGTTATCAAGCACCACAGAAGCTCTACCAATTTTTCTGCAAGAGAGGGAAATTCTAATGAGGGAGACCTCTAATGGAAGCTACAGAGTTTCATCCTATGCTATTGCCAATGGCCTAGTTTACTTGCCATTTCTACTCATACTAGCCATTTTATTCACAATGCCACTATACTGGCTTATTGGTCTCAACAGGAATTTCACAGCATTTCTGAACTTCTTGTTGCTAATTTGGCTAATTCTTTATACTGCAAATTCTGTTGTGGTATGTTTTAGTGCTCTGGTGCCTAATTTCATTGTTGGGAATTCAATGATCGCCGGTGTAATTGGTTCATTTTTCTTGTTCTCTGGCTACTTCATAACAAAGCATGAAATTCCAAAATACTGGATTTTCATGCATTATGTGTCTCTATTTAAGTATCCCTTCGAAGGGTTTCTAATAAATGAGTTCTCCAACTCAAAGAAGTGCTTGGAGTACATGTTTGGGGCATGTGTGGTGACTGGAGAGGATGTACTTAAAGAAGCAGGGTTTGGAGGGGAGAGTAGTAGATGGAAGAATGTTGGGGTGATGGTGTGCTTCATCTTGCTTTACAGGCTCATTGCTTATGTAGTTCTTAGATACAGATGCTCCCAGAGTCTCACCCTCTGA 1935 0.4062 MKKQGCEIEATGVNYKIHTQTTEQSFKIFNKPPQFHSEEDGEEPGNEAKAEQRSCSGVKHVLKDVNCTAKPRQILAIVGPSGAGKSSLLEILAGKVSPQSGSILVNQEPVDKAQFRKISGYVTQKDTLFPLLTVEETIMFSAKLRLNLPQQQLCSRVKSLIQELGLSHVARTRVGDERVRGISGGEMRRVSIGVEVVHDPKVLILDEATSGLDSTSALQIVDMLKVMAESKGRTIILSIHQPGFRIVKLLNSILLLANGYVLHHGTVDLLGVNLRLMGLELPLHVNVVEFAIESIETIQQQQKCQQAQLEAPLQRLPGRMQQKKGDDQGQSRSGKFTLQQLFQQSKVIDVEIINMGMDFTRDFTNSRLRETMILTHRFSKNIFRTKELFACRTIQMLISGLVLGTVFCHLKDGVEGAEERVGLFAFILSFLLSSTTEALPIFLQEREILMRETSNGSYRVSSYAIANGLVYLPFLLILAILFTMPLYWLIGLNRNFTAFLNFLLLIWLILYTANSVVVCFSALVPNFIVGNSMIAGVIGSFFLFSGYFITKHEIPKYWIFMHYVSLFKYPFEGFLINEFSNSKKCLEYMFGACVVTGEDVLKEAGFGGESSRWKNVGVMVCFILLYRLIAYVVLRYRCSQSLTL. 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01858 644 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 42 283 IPR003439 GO:0005524
Seca3g01858 644 ProSitePatterns ABC transporters family signature. 182 196 IPR017871 GO:0005524|GO:0016887
Seca3g01858 644 FunFam ABC transporter G family member 5 47 307 - -
Seca3g01858 644 Pfam ABC-2 type transporter 371 579 IPR013525 GO:0016020|GO:0140359
Seca3g01858 644 Gene3D - 49 322 IPR027417 -
Seca3g01858 644 Pfam ABC transporter 62 210 IPR003439 GO:0005524
Seca3g01858 644 MobiDBLite consensus disorder prediction 33 53 - -
Seca3g01858 644 SMART AAA_5 71 289 IPR003593 GO:0016887
Seca3g01858 644 MobiDBLite consensus disorder prediction 32 53 - -
Seca3g01858 644 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 269 IPR027417 -
Seca3g01858 644 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 9 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01858 Seca-Chr3 32653010 32654944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01858 67 294 Calmodulin-binding Proteins AT2G36910 27.083 6.96e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01858 K05681 - gmx:121172640 1046.19