Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01853 ATGGAAGATGAGAGCCATAGCAATTTGCCAAATGGGCTCATCAAAGGAAGCCCAGAAAGCCCTTGCTCAAAGACATCCAACCCCACCACCACCATCACTCACAACAACAAAGAACAAGATCGCTTTCTCCCTATAGCCAATGTGGGTAGGATTATGAAAAAAGCAATCCCAGCTAATGGCAAAATCTCAAAGGATGCAAAAGAGACAGTTCAAGAATGTGTATCAGAGTTCATTAGCTTTGTTACTGGGGAGGCTTCTGACAAATGTCAAAGAGAGAAAAGGAAGACCATCAATGGGGATGATATCATATGGGCCATCACAACCTTAGGATTTGAGGATTATGTGGACCCTTTAAAATCCTATCTCCAGAAATATAGAGACATAGAAGGAGAGAAGCTTAATATTCCAAAGCATCAACAAAGGCTACAACAACAGCAACATCACCCACAAGACCAAAACAATATACCTTTAAGTAGTGTATATTCCTCAACACATCTCATTTCTCAGCCTCCATATGTAGCCACGGATCAGCTATTTTCCCTACCATTCTCCTCAAATTCAATTCAGAAACAGTTGCAGCCACAGGACCAGATTGATTCAGTGGGGCAATGGTAA 615 0.4163 MEDESHSNLPNGLIKGSPESPCSKTSNPTTTITHNNKEQDRFLPIANVGRIMKKAIPANGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVDPLKSYLQKYRDIEGEKLNIPKHQQRLQQQQHHPQDQNNIPLSSVYSSTHLISQPPYVATDQLFSLPFSSNSIQKQLQPQDQIDSVGQW. 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01853 204 Gene3D Histone, subunit A 30 157 IPR009072 GO:0046982
Seca3g01853 204 MobiDBLite consensus disorder prediction 1 36 - -
Seca3g01853 204 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 42 106 IPR003958 -
Seca3g01853 204 SUPERFAMILY Histone-fold 39 147 IPR009072 GO:0046982
Seca3g01853 204 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 24 152 IPR027113 GO:0001228|GO:0006355|GO:0016602
Seca3g01853 204 PRINTS CCAAT-binding transcription factor subunit A signature 70 88 - -
Seca3g01853 204 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
Seca3g01853 204 PRINTS CCAAT-binding transcription factor subunit A signature 108 126 - -
Seca3g01853 204 FunFam Nuclear transcription factor Y subunit B-3 31 155 - -
Seca3g01853 204 MobiDBLite consensus disorder prediction 10 36 - -
Seca3g01853 204 ProSitePatterns NF-YB/HAP3 subunit signature. 73 89 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01853 Seca-Chr3 32577419 32578033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01853 12 204 CCAAT-HAP3 Transcription Factor Family AT2G13570 63.636 5.79e-69 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Seca3g01853 CBFD_NFYB_HMF 1.2e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01853 K08065 - gmx:100780647 305.064