Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01849 ATGGAATGGTATCTAAGTTCCCCTGATGATTTTATATCTTTGAACGACCTGGAGCTGACGGAGCTGGATTTGAAGCACCAAAGCCGTGACGAAGAAATGAGAAAAAATGGGATTGGGATTGAGTCTTTGCTGCAGGGATTGATTGGGTTTACAAGGAAGAAAAGGAGGACGAAAAATTATCAGAAGCGAAAATGGAGAGTGAGATGGGTAAAAAAGAGGTGCAGCCATTGCAAGACCGAAGAGACACCGCAATGGAGGGTAGGGCCTTTGGGACCTAAGACACTATGCAATGCTTGCGGAGTGCGATTCAAGTCTGGACGGTTAATTCCTGAATATCGTCCAGCCACTAGTCCCACCTTTGATAGTAGGAGGCATTCTAACTACCATAAAAACATACTCAGGAGACGATCTTCCATTTAG 420 0.4476 MEWYLSSPDDFISLNDLELTELDLKHQSRDEEMRKNGIGIESLLQGLIGFTRKKRRTKNYQKRKWRVRWVKKRCSHCKTEETPQWRVGPLGPKTLCNACGVRFKSGRLIPEYRPATSPTFDSRRHSNYHKNILRRRSSI. 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01849 139 SMART GATA_3 68 118 IPR000679 GO:0006355|GO:0043565
Seca3g01849 139 FunFam GATA transcription factor 69 118 - -
Seca3g01849 139 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 71 130 - -
Seca3g01849 139 ProSiteProfiles GATA-type zinc finger domain profile. 72 104 IPR000679 GO:0006355|GO:0043565
Seca3g01849 139 PANTHER GATA TRANSCRIPTION FACTOR 64 136 - -
Seca3g01849 139 Gene3D - 68 135 IPR013088 GO:0006355|GO:0008270
Seca3g01849 139 Pfam GATA zinc finger 74 107 IPR000679 GO:0006355|GO:0043565
Seca3g01849 139 MobiDBLite consensus disorder prediction 116 139 - -
Seca3g01849 139 CDD ZnF_GATA 73 121 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01849 Seca-Chr3 32402113 32402595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01849 47 138 C2C2-Gata Transcription Factor Family AT4G34680 56.989 3.14e-32 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca3g01849 GATA 1.8e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01849 - - aprc:113869248 208.379