Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01846 ATGAAGTTAATCGGCGACAGCGGCGGTGGCCGGAAGGTGTTAGTCGGAGTAAAGTTAGATCCTCGGAGCCGGGAATTGCTGACGTGGGCTCTCGTCAAGGTAGCGGAGCCCGGCGACCTCGTCATTGCGCTTCACGTCCTCGACACTATCACTGAGGGCACAGCATCGCTGCTATCTCTGGTGAAGACCTTCGATTCTGTTCTCGCCGTATACGAAGGCTTCTGCCATTTAAAGCAGGTTGATCTAAGGCTAAAAGTGTGTCGAGGTGGTTCGCCTCGGAAGCTTCTGGTACAAGAGGCGAAATCGTTTGGTGTTGCGACGGTGATTCTGGGAACTTCTAAGTCCCATCATCCAATTCGTTCGTCGGTATCAGTTGCTAAATATTGCGCGAAGAAATTGCCAAAGTGTGTCTCTGTCTTCGCTGTTGATAATGGCAAAATTGCATTCCACAGAGAAGCTGCCACAATTTGCAGTGATCAAGAAAAATTACATGAAGGCCCAAATTTATCATCGAAATCATTGGTGGCTTTTGCAACAAATAAAAGGATGAAGAATTGTGAAAGTTGTGCATGGCAAGAGACTTGTGAAACTGAATCTAAGGAAGGGTTTCCTGATGATCTTGAAAAGGAAAATCCACTTGCTTTGGTACCATTTCAGAAACTTGATGATGCTCCTTGTTATTCAATTGTGGTGGGTAATTCGAAACAGTCAAAACCTGGTTGGTCACTCCTTCGCCAGGTATTCCAGCCCAGGAAGCATACCCCCAAGTCTTCACTGAAAAATACATTTGTTTTTCAACGGGCATTGCGACAGCCCAACTGCCATTCTTCAGCTGTAGTCCATCCAGATCAGAAACAAATTAATATTGACCAAAATGATGATTCCACCCTAGATGGGGTGAGTGGTGCCATTGTGCCATTTGGATCTACTACTGTCTTTCCTCCTCCCTCTTTTTGCAGTGACTCAAATAGTCTTCCGGAAGAATTGATGGTCTTACAAGAGAAGTACTCATCTTCATGCCGGATATATGGTTTGCAGGAACTTGTATCTGCAACTGCCAACTTCTCCCCCGAAAATTTGGTTGGAAAAGGTGGTAGCAGTGATGTTTACAGAGGATGTCTTCCAGATGGCAAGGAATTGGCTGTGAAAATTTTGAAGCCATCAGAAAATGTGCTAAAAGAGTTTGTTCAGGAAATTGAGGTCATTACAACTTTGCATCACAAGAACATTATATCTCTATCTGGCTTTTGTTTAGAGGACAACCGTTTACTTCTGGTTTATGATTTTTTATCAAGGGGAAGCCTAGAAGAAAACCTTCATGGTAATAAAAAGGACTGTAATGCATTTGGTTGGCGAGAAAGATACCAGGTGGCTGTGGCTGTGGCTGAGGCATTGGACCATCTGCACAATGGCTGTGCACAGGCTGTGATCCATAAGGATGTGAAATCTTCGAATATCCTTCTTTCTGATGAATTTGAGGCTCAGCTCTCCGATTTCGGACTGGCTAGTTGGGGTTCTTCTTCTTCCCATATTACTTGCACTGATGTGGCCGGAACTTTTGGATACCTAGCTCCTGAATACTTTATGCATGGTAGAGTGACTGACAAAATTGATGTATATGCTTTTGGGGTTGTACTCCTTGAGCTTCTATCAAATAGGAAGCCCATTAACAATGAATGTCCAAAGGGCGCAGAGAGCCTTGTTATGTGGGCAACACCTATTTTGAAAGATGGGAAGCTCTCCCAGTTGCTTGATCCAAGCCTAGGCAGTGAATATGACCATTCGCAGATCAAGAGAATGGTGTTGGCTGCTACTCTCTGCATAAGACGAGCTCCTAGATTACGACCTCAAATCAGCCTTATATTGAAACTTCTGCGTGGTGTCGAAGAAGTGACAAGATGGGCAGAACTAGAGGCTAGTGCACCAGAGGAACTTGATGGATTTGATGAGGAACCAGTTCCAACCAATATTCAGTCCCACCTTAACCTTGCATTGCTGGACTTGGAAGATGATGCAGTTTCTATCAGTAGTACTGAGCAGAGTGTTTCATTGGAGGACTATTTACAGGGAAGATGGAGTCGCTCTTCTAGTTTTGACTAA 2100 0.4443 MKLIGDSGGGRKVLVGVKLDPRSRELLTWALVKVAEPGDLVIALHVLDTITEGTASLLSLVKTFDSVLAVYEGFCHLKQVDLRLKVCRGGSPRKLLVQEAKSFGVATVILGTSKSHHPIRSSVSVAKYCAKKLPKCVSVFAVDNGKIAFHREAATICSDQEKLHEGPNLSSKSLVAFATNKRMKNCESCAWQETCETESKEGFPDDLEKENPLALVPFQKLDDAPCYSIVVGNSKQSKPGWSLLRQVFQPRKHTPKSSLKNTFVFQRALRQPNCHSSAVVHPDQKQINIDQNDDSTLDGVSGAIVPFGSTTVFPPPSFCSDSNSLPEELMVLQEKYSSSCRIYGLQELVSATANFSPENLVGKGGSSDVYRGCLPDGKELAVKILKPSENVLKEFVQEIEVITTLHHKNIISLSGFCLEDNRLLLVYDFLSRGSLEENLHGNKKDCNAFGWRERYQVAVAVAEALDHLHNGCAQAVIHKDVKSSNILLSDEFEAQLSDFGLASWGSSSSHITCTDVAGTFGYLAPEYFMHGRVTDKIDVYAFGVVLLELLSNRKPINNECPKGAESLVMWATPILKDGKLSQLLDPSLGSEYDHSQIKRMVLAATLCIRRAPRLRPQISLILKLLRGVEEVTRWAELEASAPEELDGFDEEPVPTNIQSHLNLALLDLEDDAVSISSTEQSVSLEDYLQGRWSRSSSFD. 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01846 699 SMART serkin_6 355 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01846 699 FunFam Putative receptor-like serine/threonine-protein kinase 430 641 - -
Seca3g01846 699 ProSiteProfiles Protein kinase domain profile. 355 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01846 699 CDD USP_Like 12 137 - -
Seca3g01846 699 Gene3D HUPs 10 143 IPR014729 -
Seca3g01846 699 Gene3D Transferase(Phosphotransferase) domain 1 430 641 - -
Seca3g01846 699 PANTHER OS08G0249100 PROTEIN 120 648 IPR046958 -
Seca3g01846 699 SUPERFAMILY Protein kinase-like (PK-like) 336 625 IPR011009 -
Seca3g01846 699 Pfam Universal stress protein family 11 137 IPR006016 -
Seca3g01846 699 ProSitePatterns Protein kinases ATP-binding region signature. 361 383 IPR017441 GO:0005524
Seca3g01846 699 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 11 139 - -
Seca3g01846 699 Gene3D Phosphorylase Kinase; domain 1 321 429 - -
Seca3g01846 699 Pfam Protein kinase domain 358 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01846 699 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 324 429 - -
Seca3g01846 699 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
Seca3g01846 699 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 10 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01846 Seca-Chr3 32367770 32371473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01846 342 626 Trihelix Transcription Factor Family AT1G68690 43.771 3.21e-73 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Seca3g01846 Pkinase 1.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01846 - - gmx:100815722 1135.94