Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01837 ATGTCTGGAAAGGGGAAGAAGAGGGAGGAGCACGACTGCGCTTCCGATGGCGACTCCGAAGGCCACGCGCCTCCCAAAAAGTCTCTCAAAAGAGATTCCGATGACGACCCCGACTCCATCGTTGTCTGTGAGATTTCAAAGAACAGGAGGGTTTCCGTGAGGAATTGGCAGGGCAGGATTGTGGTTGACATTCGCGAGTTTTACGTCAAAGATGGCAAGCAAATGCCCGGCAAAAAAGGTTTTTCAATCCTTCGTTTTAGTTTGTAA 267 0.4981 MSGKGKKREEHDCASDGDSEGHAPPKKSLKRDSDDDPDSIVVCEISKNRRVSVRNWQGRIVVDIREFYVKDGKQMPGKKGFSILRFSL. 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01837 88 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 20 82 IPR045125 GO:0003713|GO:0060261
Seca3g01837 88 SUPERFAMILY ssDNA-binding transcriptional regulator domain 42 83 IPR009044 GO:0003677|GO:0006355
Seca3g01837 88 Gene3D Transcriptional Coactivator Pc4; Chain A 30 85 IPR009044 GO:0003677|GO:0006355
Seca3g01837 88 Pfam Transcriptional Coactivator p15 (PC4) 43 83 IPR003173 GO:0003677|GO:0006355
Seca3g01837 88 MobiDBLite consensus disorder prediction 1 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01837 Seca-Chr3 32254911 32257174 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Seca3g01837 PC4 4.8e-17 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01837 K25815 - gmx:100820368 138.272