Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01821 ATGAAGAGTGAATTAGAGTTACCACCTGGCTTCAGATTTCACCCTACCGATGAGGAATTGGTGAATCACTACTTGTGTAGGAAATGTGCTGGTCAACCAATCTCTGTTCCTGTTATCAAAGAAATCGATTTGTATAAGTTTGATCCATGGCAGCTTCCAGGTATATTATTTATTATTAATTTATTTAACTTTGTCATTGAATTGTATGCAGAAATGGGTTTTCAGAGCGAAAAGGAATGGTACTTCTTCTCTCCAAGGGATCGGAAATACCCTAACGGTTCACGGCCGAACCGGGCTGCCGGAAGCGGTTATTGGAAAGCAACTGGAGCCGATAAACCGATCGGAAAACCGAAGGCATTAGGGATAAAAAAGGCACTGGTGTTCTATGCCGGAAAAGCCCCTAAAGGAGTGAAAACCAATTGGATCATGCATGAATATCGCCTTGCTAATGTTGACAGATCTGCTGGCAAGAAAAACAATCTTGATGATTGGGTGTTATGTAGAATTTACAACAAGAAAGGGAAGATTGAGAAATTCAACAACACGGTGATACCGAAATTTTCTGAGGCTTATGAGCATGAGAGGAAGCCAGAAATTCATAAGCTAACGAATGACCAATTATACATGGACACGTCAGATTCAGTGCCAAGGTTGCACACGGACTCGAGTAGTTCAGGTCACGTGGTTTCACCGGATGTCACGTGCGATAAGGAGGTGCAGAGCGAGGCCAAGTGGAATGAACTAGAGCTTGATAACGCGTTTGATTTTCAGTTCAATTACTTGGATAATAACCTTTCGGTGGATGTGGATGACCCTTTTGGGACACAGGTTCAGTACCAAATGAACCAGCTCTCGCCATTGCAGGACATGTTCATGTACCTACAAAGGCCATTTTGA 897 0.4281 MKSELELPPGFRFHPTDEELVNHYLCRKCAGQPISVPVIKEIDLYKFDPWQLPGILFIINLFNFVIELYAEMGFQSEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKPKALGIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSAGKKNNLDDWVLCRIYNKKGKIEKFNNTVIPKFSEAYEHERKPEIHKLTNDQLYMDTSDSVPRLHTDSSSSGHVVSPDVTCDKEVQSEAKWNELELDNAFDFQFNYLDNNLSVDVDDPFGTQVQYQMNQLSPLQDMFMYLQRPF. 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01821 298 PANTHER NAC TRANSCRIPTION FACTOR 56 7 216 - -
Seca3g01821 298 FunFam NAC transcription factor 16 176 - -
Seca3g01821 298 Pfam No apical meristem (NAM) protein 8 148 IPR003441 GO:0003677|GO:0006355
Seca3g01821 298 ProSiteProfiles NAC domain profile. 7 172 IPR003441 GO:0003677|GO:0006355
Seca3g01821 298 Gene3D NAC domain 16 177 IPR036093 GO:0003677|GO:0006355
Seca3g01821 298 SUPERFAMILY NAC domain 4 172 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01821 Seca-Chr3 32030779 32032535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01821 1 298 NAC Transcription Factor Family AT1G01720 60.000 2.25e-119 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca3g01821 NAM 7.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01821 - - gmx:100779770 465.307