Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01819 ATGAGTCTCCAACTCTGGTTATTCATGATGAGTACCAGTGTCCCAGTTCTCACCAGAGCCTTTTCACACCATTTAACTAGAAAGAGCTTTGGAAAGCAACTTCAATTCCATTCTCGCTGCCTTGTTTTCTCTTCATACTCAGGTTCTGCAACTCTATCAGTGATGGAAGAAATACAAGAGAAGCCTATATTTGATGGAGAGAAGGCTGCTTTGCTTGTTAAGGAGCTTAGACAGAGCTTTGATTCAGGCAAGACAAAAAGCTATAAATGGAGGATTTCCCAATTGGAGAGCATAGTTAAAATGCTAGAAGAGAGGGAGAATGACATTATTACAGCACTTGATAAGGACCTTTCTAAACCTGGATTTGAAGCATTTCTATCTGAGGTGTCTCAGACAAAAGCCTTATGTAGTGAGGCACTTAAAGAACTGAAGCACTGGATGAAGCCTGAAAAGGTAAAAACTTCAATTACAACATATCCATCATCAGCAGAGATTGTGTCAGAACCACTGGGAGTTGTGTTGGTTATCTCAACATGGAACTTTCCTTTCATGTTATCACTTGATCCAATCATAGGAGCAATTTCAGCAGACTATCTAGATAACTCTGTCATAAGAGTTGTTGAAGGGGCTGTTCCTGAAACAACTGCACTCTTGGAGCAGAAGTGGGATAAGATACTATACACAGGTAGTGCTAGAGTAGCCCGCATTGTCATGGCTGCTGCTGCAAAGCACCTTACCCCAGTAATTCTAGAACTTGGAGGAAAGTGCCCTGCTGTTGTTGATTCAAATGTCAACTTACAAGTCACTGCTAGGAGGATAATAGCTGGAAAGTGGGCATGCAATAGTGGACAAGCATGCATTTCTGTTGATTATATCATCACAAAAAAAGAATTTGCTCAAACACTTATAAATGCTCTAAAAGAGGAATTGGAGCAATTTTTTGGAAAAGATCCATTGCAATCAAAAGACATGTCACGTATTGTTTCTCCATTCCACTTTGCAAGGCTTGTGAAGCTCTTGGATGAGGATAAGGTATCTGACAAAATTGTTTTAGGAGGTCAGAAGGATGAGATGCAATTAAAGATAGCTCCAACCATCATATTGGATGCTCCAGAAGATTCTATTGTAATGCAAGAAGAGATATTTGGGCCAATAATGCCAATTATCACTGTTGACAACATAGAAGATAGCTATAGTATAATCAAATCAAAGCCAAAACCTCTTGCTGCATATCTTTTCACAAACAATGAGAAGCTGAAGAAGGATTATGTTGAAAACATATCTTCTGGAGGGATGCTCATCAATGACACAATCTTACATGTTGCAACTCCTGGTTTGCCATTTGGAGGAGTTGAAGAGAGTGGAATGGGTTGTTACCATGGAAAATTTTCCTTTGATGGTTTCAGTCATAAGAAAGCAGTCCTGTATAGAAGTTTTGAAGCAGATTCATCCATAAGGTATCCCCCATATACACCTGAAAAGCAAAAATTGCTCAAGGCCCTTATCGGTGGCAATATTTTCCGGGTTATTCTTACCTTGATTGGATGGTCTAAAGAATAA 1560 0.3942 MSLQLWLFMMSTSVPVLTRAFSHHLTRKSFGKQLQFHSRCLVFSSYSGSATLSVMEEIQEKPIFDGEKAALLVKELRQSFDSGKTKSYKWRISQLESIVKMLEERENDIITALDKDLSKPGFEAFLSEVSQTKALCSEALKELKHWMKPEKVKTSITTYPSSAEIVSEPLGVVLVISTWNFPFMLSLDPIIGAISADYLDNSVIRVVEGAVPETTALLEQKWDKILYTGSARVARIVMAAAAKHLTPVILELGGKCPAVVDSNVNLQVTARRIIAGKWACNSGQACISVDYIITKKEFAQTLINALKEELEQFFGKDPLQSKDMSRIVSPFHFARLVKLLDEDKVSDKIVLGGQKDEMQLKIAPTIILDAPEDSIVMQEEIFGPIMPIITVDNIEDSYSIIKSKPKPLAAYLFTNNEKLKKDYVENISSGGMLINDTILHVATPGLPFGGVEESGMGCYHGKFSFDGFSHKKAVLYRSFEADSSIRYPPYTPEKQKLLKALIGGNIFRVILTLIGWSKE. 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01819 519 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 255 454 IPR016163 GO:0016620
Seca3g01819 519 SUPERFAMILY ALDH-like 72 490 IPR016161 GO:0016491
Seca3g01819 519 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 196 469 IPR016162 GO:0016491
Seca3g01819 519 FunFam Aldehyde dehydrogenase 254 454 - -
Seca3g01819 519 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 77 195 IPR016162 GO:0016491
Seca3g01819 519 PANTHER ALDEHYDE DEHYDROGENASE 197 509 IPR012394 GO:0006081
Seca3g01819 519 Pfam Aldehyde dehydrogenase family 62 195 IPR015590 GO:0016491
Seca3g01819 519 Pfam Aldehyde dehydrogenase family 199 474 IPR015590 GO:0016491
Seca3g01819 519 PIRSF ALDH 50 197 IPR012394 GO:0006081
Seca3g01819 519 PIRSF ALDH 196 513 IPR012394 GO:0006081
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01819 Seca-Chr3 32006769 32011467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01819 41 519 Aldehyde Dehydrogenase Gene Family AT4G34240 62.823 0.0 639
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01819 K00128 - gmx:100800699 808.52