Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01814 ATGGGAGACGGCACTGCTGCCAACGCCTCGAACCGCTCGAACAGCAACAGCGGAAGCAACAAGCCAGAGTGGCTGCAACAGTATGATCTGATAGGGAAGATTGGAGAAGGCACCTACGGTCTCGTCTTCCTCGCTCGGATCAAGTCTCCCACCAATCGTGGAAAATCCATCGCCATCAAGAAATTCAAACAATCCAAGGATGGCGACGGTGTCTCTCCCACTGCCATCCGTGAAATCATGTTACTGAGGGAGATAACACACGAGAATGTTGTGAAGCTTGTGAATGTTCACATCAATCATGCGGACATGTCTCTGTATCTAGCTTTCGATTATGCCGAACATGACCTTTATGAAATAATACGACATCATAGAGACAAGGTCAACCAATCCATTAATCAATACACAGTTAAATCACTACTATGGCAGTTGCTCAATGGACTAAACTATCTGCACAGTAATTGGATAATCCATCGAGATTTAAAGCCATCAAATATATTGGTTATGGGTGAAGGGGAGGAACATGGAGTTGTTAAAATTGCTGACTTTGGACTTGCGAGGATATATCAAGCTCCTTTGAAGCCATTATCTGAAAATGGGGTTGTTGTAACCATTTGGTATCGTGCACCTGAGTTGCTTCTTGGAGCAAAACATTATACCAGTGCTGTTGATATGTGGGCTGTGGGATGCATTTTTGCTGAGTTGTTGACCTTGAAGCCACTATTTCAAGGTGCAGAAGTCAAAGCCACACCAAATCCTTTTCAGCTCGATCAACTTGACAAGATATTCAAGGTTTTAGGCCATCCCACATTAGAAAAGTGGCCTTCCTTAGCAAATCTTCCCCATTGGCAACAAGATTCGCAACATATACAAGGACACAAATATGACAATGCTAGCCTCTATAGTGTTGTACATCTATCTCCAAAAAGTCCTGCATATGATCTCTTGTCAAAGATGCTTGAATATGATCCTCGAAAGCGTATAACAGCAGCACAAGCTTTGGAGCATGAGTATTTCAAAATTGAACCACAACCTGGGCGGAAGTAA 1044 0.432 MGDGTAANASNRSNSNSGSNKPEWLQQYDLIGKIGEGTYGLVFLARIKSPTNRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKVNQSINQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEHGVVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEVKATPNPFQLDQLDKIFKVLGHPTLEKWPSLANLPHWQQDSQHIQGHKYDNASLYSVVHLSPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFKIEPQPGRK. 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01814 347 FunFam Putative cyclin-dependent kinase E-1 112 347 - -
Seca3g01814 347 FunFam Cyclin-dependent kinase e-1 16 111 - -
Seca3g01814 347 Gene3D Transferase(Phosphotransferase) domain 1 110 345 - -
Seca3g01814 347 MobiDBLite consensus disorder prediction 1 21 - -
Seca3g01814 347 Gene3D Phosphorylase Kinase; domain 1 12 109 - -
Seca3g01814 347 PANTHER CELL DIVISION PROTEIN KINASE 26 342 - -
Seca3g01814 347 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
Seca3g01814 347 Pfam Protein kinase domain 28 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01814 347 SMART serkin_6 28 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01814 347 CDD STKc_CDK8_like 27 338 - -
Seca3g01814 347 ProSiteProfiles Protein kinase domain profile. 28 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01814 347 SUPERFAMILY Protein kinase-like (PK-like) 23 339 IPR011009 -
Seca3g01814 347 ProSitePatterns Protein kinases ATP-binding region signature. 34 61 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01814 Seca-Chr3 31955039 31962456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01814 1 346 Core Cell Cycle Gene Families AT5G63610 82.370 0.0 593
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK8 Seca3g01814 Pkinase 4.9e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01814 K02208 - gmx:100813433 651.744