Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01807 ATGGCACAAGGGGAAAAAAGAAATGTAAGTGGCTTTGATGTTGGTACTGGACATGGCAGCTTCTTTATCCGAGTCAACAATCAGAATTATCACAATATGTTTCCTGATGAAGTACAAATTAGAACCAGTAGTGGTTTCTGTAGTATAAATCCTGAAAATCCAAGAGCAATGCAAAACTTGTTTGGTGATGAAGTTCTTGCCATGCGATTTGATTCCTATGAAGCTGGGAAGTCATTTTACCATAAATATGCTTCAGCTGTTGGCTTTACTGTTCGAGAGGATGACATGGGTAAATACAAGCTGGGTGGTGAGGTTGTCATGAAACGATGGATTTGTAATGGAGAAGGCTTTCAGCAAAATATAGGGGATCCTAGTTCATCAACTAGAGTTAAGTGTCCTGCTGCATTTTGCATACATGCTGACAGTGTCAGTCATAAGTGGCTTGTAATAGAGTTTGTGGCAAAGCATACACATGATTTGGCACCAACATGCAAACATCTTCAAGTGGCAGTAGCAGATAATTTGGAAAGAAAAGATGCTGAGTATTATATAGTTGGTACAGCAGTAAAACTGCCCACTTCTTGTGAGCGAATTTCAATCACTGATGTGGAAAGTGCCCTTGATTATCTATGTTATAAGAAGAATGGAGACTCTGGGTTATTCTATGAAACAAAATTTGTTGAAGGTCGTTTATCATCTCTGTTTTGGGCAGACTCTGTATCTCAGTTAGATAATGCGTGTTTTGGAGAAGCTATGGCAGTCTATAGGACAAATTCATATATGATGCCATTAGTCATATTGGCTGGTCTCAATCATCATCATCAAACATGTGTATTTGGATGTGCTTTACTTCATGAGGAGACTGTTGAGGCATACACATGGTTGTTTCAAACATTTCTTCATGTGATGCAGGGTTGCATGCCCCTATCTGTGGTGACTGATGGTCATAAAGCTGTACACAAAGCTATTAAACATGTGTTACCACGATCAAGACAACCGCTATGCACATGGCATCTTGAGAATGAAGCTCATTCCATTGTTAATAAACGGTCCTTTGTATCTGACTTTAAAGTATGCATGATGGAGGTTCTTTCACAAGAGGATTTTGAGCTTAAATGGAAAGCAATGGTGGAAAAGTATAAACTGTCTGAGAACCCATGGATACATAGGATGTATAAGAAACGTCACATGTGGGCAGAGACTTACTTGAGAGGACATTTCTGGGGTGGGTTGCAAAGCACAAGAGTATGTGAAAGGATCAATGAACATTTGAGTAGGTTTTCACACAATAAAATGAGGATATTTCAATTTATTCAACTGTGTGATGAGGCCATTTTTCCAATTCGGTTCTCTGAGGCGAAGGCAGAATATGAATCCATCCACATCAAGTTTTCTGTTTCAACATCTCTTGTGAAAATTGAGAAACATGCTGCTGATGTGTTTACACGGGAGTCTTATGAAAGGTTTCTTTTAGAGATGCAGTTGGAGTCTCTTTTGTTTATTTTAAACAAAGATGATGGTTCAAACCATCGCACATACAGATTGGGCAACTATGAGAATCAGAACTCAGCATATGAAGTTATGTTCAAGCCTAGTGGTCCAAGTATTAAATGCTCATGCTTGAAGTTTGAGACATTGGGACTTCCTTGCAGTCACATTATTCATGTAATCAAATCTGAGCGATTGGAAAAAATCCCCCAAAATCTCATACACCTGAGGTGGACAAAAACAGCAAAGTCAAGTGCACAATATTGGCAGCGTTCCTTGCCTCCAGTATCTAGTGATCTTATGGAAAAACTGATGCGCTATGGTGCTTTGACGTCTAATTTTTCCATACTAAGTTACTTGGCGTCAAAATCTTCTGAGCAGACATATAACTTTGTGTGCAATTCACTGTGTGAGTTAAGAAATGAACTAAATGAGTGCTCTATTGCCTGTAGTGAGAGGGATGGCGGTTCTGTTTCAAGAATTGCGAGATCTAAAGGTAACCAGAAATGTGGAAGAAAGAAAACTAATGGAGACAAGCGAAGGAAAACCAATGGAGATGGGCATTCCAGAAATGTGTAA 2067 0.3914 MAQGEKRNVSGFDVGTGHGSFFIRVNNQNYHNMFPDEVQIRTSSGFCSINPENPRAMQNLFGDEVLAMRFDSYEAGKSFYHKYASAVGFTVREDDMGKYKLGGEVVMKRWICNGEGFQQNIGDPSSSTRVKCPAAFCIHADSVSHKWLVIEFVAKHTHDLAPTCKHLQVAVADNLERKDAEYYIVGTAVKLPTSCERISITDVESALDYLCYKKNGDSGLFYETKFVEGRLSSLFWADSVSQLDNACFGEAMAVYRTNSYMMPLVILAGLNHHHQTCVFGCALLHEETVEAYTWLFQTFLHVMQGCMPLSVVTDGHKAVHKAIKHVLPRSRQPLCTWHLENEAHSIVNKRSFVSDFKVCMMEVLSQEDFELKWKAMVEKYKLSENPWIHRMYKKRHMWAETYLRGHFWGGLQSTRVCERINEHLSRFSHNKMRIFQFIQLCDEAIFPIRFSEAKAEYESIHIKFSVSTSLVKIEKHAADVFTRESYERFLLEMQLESLLFILNKDDGSNHRTYRLGNYENQNSAYEVMFKPSGPSIKCSCLKFETLGLPCSHIIHVIKSERLEKIPQNLIHLRWTKTAKSSAQYWQRSLPPVSSDLMEKLMRYGALTSNFSILSYLASKSSEQTYNFVCNSLCELRNELNECSIACSERDGGSVSRIARSKGNQKCGRKKTNGDKRRKTNGDGHSRNV. 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01807 688 ProSiteProfiles Zinc finger SWIM-type profile. 525 561 IPR007527 GO:0008270
Seca3g01807 688 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 66 640 IPR031052 GO:0006355
Seca3g01807 688 SMART 26again6 536 563 IPR006564 GO:0008270
Seca3g01807 688 Pfam MULE transposase domain 254 341 IPR018289 -
Seca3g01807 688 Pfam FAR1 DNA-binding domain 78 161 IPR004330 -
Seca3g01807 688 MobiDBLite consensus disorder prediction 657 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01807 Seca-Chr3 31828435 31830501 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g01807 MULE 1.6e-21 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01807 - - ccaj:109803703 613.224