Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01800 ATGAACACTGATGGTAATGAACCCCAAAAATCTAATTCCCCCAATAATCACAATGTTGAATCTGATAAGATTGTTGATGGTTACAAAAAGATATTTGAATTAACAAATGAGGATATCAGAGGTCTTGAGTTTGATTCTGAAGAGGATGCATATGTTTTCTATTGTGAGTATGCAAAATTCATAGGGTTTGCTGTTAGGAAACAAGATGTGTATAGAGATCGTAATGATCTAATTACAATGAGACAATTGGTATGTAACAAGGAGGGAGAGAGAAATGGGAAGCATCTTAATAGGACTGATAGAAAGAGGGAGGCAAAGGCCATTACATGGACAAAATATAATCTAGTTCACAACAATGAATTGACTCCTGTGAGTATGGTGCATTCGCTACCAGCTTATCGTGGGTTGAGTGTAGCTGATAAGGCACAGGTTGGTGGTATTTATTTATATGGTGTTAGGATTTTCCATATTATGGGTCTTATAATGGGTCAGAAGGGGGTTATTCAGATCTTGGGTTCTATAAGAAAGATTTGTACAATCACATTGATAAGGTGA 555 0.3622 MNTDGNEPQKSNSPNNHNVESDKIVDGYKKIFELTNEDIRGLEFDSEEDAYVFYCEYAKFIGFAVRKQDVYRDRNDLITMRQLVCNKEGERNGKHLNRTDRKREAKAITWTKYNLVHNNELTPVSMVHSLPAYRGLSVADKAQVGGIYLYGVRIFHIMGLIMGQKGVIQILGSIRKICTITLIR. 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01800 184 MobiDBLite consensus disorder prediction 1 21 - -
Seca3g01800 184 MobiDBLite consensus disorder prediction 1 20 - -
Seca3g01800 184 Pfam FAR1 DNA-binding domain 53 104 IPR004330 -
Seca3g01800 184 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 15 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01800 Seca-Chr3 31616619 31617226 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g01800 FAR1 1.6e-10 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01800 - - ccaj:109792835 152.525