Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01798 ATGCACAAACACAAAAGTGATGTCTTTTTTGATGTTCCAGGAGAAGATGAGAGCCAAATTTCCTTTTGGCAGTTGAGAAGATTTTCTTGGCGTGAACTCCAACTTGCTACTAAAAATTTTAGTGAAAGAAATGTGATTGGCCAGGGAGGCTTTGGAAAAGTTTATAAAGGAGTACTATCAGATGGTACAAAAGTAGCTGTGAAACGCCTTGCTGATTATCATACTCCTGGTGGAGAGGCTGCATTTCAAAGAGAGGTTCAACTTATAAGTGTTGCAGTTCATAGGAATCTCATGAGATTAATTGGGTTCTGTACAACCTCAACTGAAAGAATCCTAGTATATCCTTTCATGAAAAATGGAAGTGTAGCATATAGATTGAGAGATTTAAAACCTGATGAGAAAGGTTTGGACTGGCCAATGAGGAAACGTGTGGCTTTTGGTACAGCTCATGGCTTGGAGTATCTACATGAACAATGCAATCCAAAGATAATACACCGTGATTTGAAGGCAGCAAACATTCTACTAGATGATGAATTTGAAGCTGTTCTAGGAGATTTTGGGCTAGCTAAGCTGGTAGATACAAGGATGACTCATGTTACCACTCAAGTAAGAGGTACAATGGGTCATATAGCCCCAGAATATTTATCCACTGGAAAATCATCAGAAAAAACAGATGTCTTTGGCTATGGTATAACACTTCTTGAACTAGTCACTGGTCAACGTGCCATAGACCTTTTTCGCCTTCAAGAGGAGGAGGATGCACTCCTTCTTGATCATATAAAAAAGCTACTGAGAGAAAACAGGCTGGAGGACATAGTGGATAGGAATTTGGAGATTTATGATAGGAAAGAAGTTGAGAACATTGTTCATGTTGCATTGCTTTGCACTAAAGGGTTGCCAGAGGAGCGTCCAACGATGTCAGAGGTGGTAAAAATGCTGGAAGGGGTGGGTTTGGCAGAGAGATGGGCTGAGTGGGAGCATGAAGAAGAGGTGTGTAATCAACTCATGTCTCACCAGTTTGTTTGGACTGATGAATCTACTCAAAATCAAGAGGCTATACAGCTTTCCAGAGCAAGATAG 1080 0.4065 MHKHKSDVFFDVPGEDESQISFWQLRRFSWRELQLATKNFSERNVIGQGGFGKVYKGVLSDGTKVAVKRLADYHTPGGEAAFQREVQLISVAVHRNLMRLIGFCTTSTERILVYPFMKNGSVAYRLRDLKPDEKGLDWPMRKRVAFGTAHGLEYLHEQCNPKIIHRDLKAANILLDDEFEAVLGDFGLAKLVDTRMTHVTTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGQRAIDLFRLQEEEDALLLDHIKKLLRENRLEDIVDRNLEIYDRKEVENIVHVALLCTKGLPEERPTMSEVVKMLEGVGLAERWAEWEHEEEVCNQLMSHQFVWTDESTQNQEAIQLSRAR. 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01798 359 FunFam Somatic embryogenesis receptor-like kinase 1 117 333 - -
Seca3g01798 359 FunFam Somatic embryogenesis receptor kinase 1 9 116 - -
Seca3g01798 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Seca3g01798 359 ProSiteProfiles Protein kinase domain profile. 40 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01798 359 SMART serkin_6 40 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01798 359 Gene3D Phosphorylase Kinase; domain 1 9 116 - -
Seca3g01798 359 Pfam Protein kinase domain 41 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01798 359 PIRSF ILK 23 332 - -
Seca3g01798 359 ProSitePatterns Protein kinases ATP-binding region signature. 46 68 IPR017441 GO:0005524
Seca3g01798 359 SUPERFAMILY Protein kinase-like (PK-like) 18 314 IPR011009 -
Seca3g01798 359 Gene3D Transferase(Phosphotransferase) domain 1 117 333 - -
Seca3g01798 359 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 23 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01798 Seca-Chr3 31602635 31604910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01798 2 354 Receptor kinase-like Gene Family AT5G65240 70.556 1.15e-180 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Seca3g01798 Pkinase 3.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01798 - - gmx:100800886 605.134