Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01787 ATGGCCGCAGAAATTTGTGGCGGGTCTCTATTCTTATCCGTTAAAACTCAACTGCAACTGCAACAACAACAACTATTCCTCCATGCTCAACGAACCAGAACAACAACAACCACTACCAGATTCCACTCATCCAAACCTTCCTTTTCTCCTCGCTCTTTCAATGCCTCCACCACCTTTCGCCGCAGCGTTTTCTGCCAGGTTGCTAGCACTGACACGCTCTCCGACTTCGAATCCGCCGCCAAAGCTGGCCAAGATCGTCTCTCTAAGGTGCCGGTGTCTAATATAAGGAACTTTTGCATCATTGCTCATATTGACCATGGCAAATCCACCCTGGCTGATAAGTTGCTTCAGGTTACTGGAACTGTGCACCAGCGAGAGATGAAGGACCAGTTTCTCGATAACATGGATTTGGAGAGAGAAAGAGGCATCACTATCAAGCTTCAGGCAGCTCGAATGCGATATGTGTTTGAAAATAAACCATATTGCTTAAATTTAATAGATACTCCAGGGCATGTCGACTTCTCGTATGAGGTTTCTCGATCACTTGCAGCATGTGAGGGTGCTCTCCTTGTAGTAGATGCTTCTCAGGGGGTTGAAGCACAGACACTAGCTAATGTTTATTTGGCTCTGGAGAACAACCTAGAAATTATCCCTGTTTTGAACAAAATAGATCTTCCAGGTGCAGAACCCGATCGAGTTATCAAGGAGATTGAAGAGATTGTAGGTCTAGATTGCAGCAACGCGATTCTCTGCTCTGCAAAGGAAGGAATAGGTATAATTGATATTCTCAATGCAATCGTTGAAAGAATTCCCCCACCAGCTGATACATCTGAAAAGCCGTTGAGGGCTTTAATATTTGATAGTTACTATGATCCATATAGAGGTGTTATTGTATACTTTCGAGTTATAGATGGGACTATAAAGAAAGGTGACAGAGTATATTTTATGGCTAGTGGTAAGGATTATTTTGCCGATGAAATTGGAGTTTTGTCTCCAAATCAACTCCAAGTCGAACAATTGTATGCTGGTGAGGTGGGCTATCTATCTGCATCAATAAGAACAGTAGCTGATGCCAGAGTAGGTGACACTATTACTCACTATACCAGAAAGGCGGATAATTCACTCCCTGGATATGAGGAAGCCACTCCTATGGTGTTCTGTGGCCTGTTTCCTGTCGACGCTGACCAATTTCCTGACCTACGTGATGCACTTGAGAAGCTACAACTAAACGATGCTGCCCTAAAGTTTGAACCTGAGACCTCAAGTGCTATGGGATTTGGCTTTAGATGTGGGTTTCTGGGTCTTCTCCACATGGAAATTGTTCAGGTTTGA 1332 0.4392 MAAEICGGSLFLSVKTQLQLQQQQLFLHAQRTRTTTTTTRFHSSKPSFSPRSFNASTTFRRSVFCQVASTDTLSDFESAAKAGQDRLSKVPVSNIRNFCIIAHIDHGKSTLADKLLQVTGTVHQREMKDQFLDNMDLERERGITIKLQAARMRYVFENKPYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPDRVIKEIEEIVGLDCSNAILCSAKEGIGIIDILNAIVERIPPPADTSEKPLRALIFDSYYDPYRGVIVYFRVIDGTIKKGDRVYFMASGKDYFADEIGVLSPNQLQVEQLYAGEVGYLSASIRTVADARVGDTITHYTRKADNSLPGYEEATPMVFCGLFPVDADQFPDLRDALEKLQLNDAALKFEPETSSAMGFGFRCGFLGLLHMEIVQV. 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01787 443 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 300 IPR027417 -
Seca3g01787 443 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 93 274 IPR000795 GO:0003924|GO:0005525
Seca3g01787 443 PANTHER TRANSLATION FACTOR GUF1-RELATED 73 442 IPR006297 GO:0005525
Seca3g01787 443 CDD EF4_III 383 442 - -
Seca3g01787 443 Gene3D Translation factors 276 375 - -
Seca3g01787 443 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 133 148 IPR031157 -
Seca3g01787 443 PRINTS GTP-binding elongation factor signature 140 148 IPR000795 GO:0003924|GO:0005525
Seca3g01787 443 PRINTS GTP-binding elongation factor signature 164 174 IPR000795 GO:0003924|GO:0005525
Seca3g01787 443 PRINTS GTP-binding elongation factor signature 97 110 IPR000795 GO:0003924|GO:0005525
Seca3g01787 443 PRINTS GTP-binding elongation factor signature 180 191 IPR000795 GO:0003924|GO:0005525
Seca3g01787 443 PRINTS GTP-binding elongation factor signature 216 225 IPR000795 GO:0003924|GO:0005525
Seca3g01787 443 NCBIfam translation elongation factor 4 94 442 IPR006297 GO:0005525
Seca3g01787 443 CDD EF4_II 281 366 - -
Seca3g01787 443 Hamap Elongation factor 4 [lepA]. 90 443 IPR006297 GO:0005525
Seca3g01787 443 SUPERFAMILY Translation proteins 272 377 IPR009000 -
Seca3g01787 443 FunFam Elongation factor 4 92 275 - -
Seca3g01787 443 SUPERFAMILY EF-G C-terminal domain-like 382 442 IPR035647 -
Seca3g01787 443 FunFam Translation factor GUF1, mitochondrial 276 374 - -
Seca3g01787 443 Gene3D - 92 275 IPR027417 -
Seca3g01787 443 Pfam Elongation factor Tu GTP binding domain 94 271 IPR000795 GO:0003924|GO:0005525
Seca3g01787 443 NCBIfam small GTP-binding protein domain 96 265 IPR005225 GO:0005525
Seca3g01787 443 Pfam Elongation factor Tu domain 2 295 365 IPR004161 GO:0005525
Seca3g01787 443 CDD LepA 96 273 - -
Seca3g01787 443 Gene3D Elongation Factor G (Translational Gtpase), domain 3 376 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01787 Seca-Chr3 31507445 31513105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01787 94 328 Eukaryotic Initiation Factors Gene Family AT3G22980 33.468 8.11e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01787 K21594 - gmx:100809693 768.844