Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01780 ATGGATGTGGAAAACACAGAAAGTTCTATTGCTAAGGGGACAAAAGATCATGAGAGAATTGATCATGTGTCTGATGAGGCTACTATTGATGAGCAACCTAATCTTTGTCCTAGCATTGGAATGGAATTTGATTCCCTTGAGGATGTTAAAGAGTTATACACATCATTTGCTAAGAAAACGGGTTTTGGTATTCGTACTCGTTCAACTAAAGAGAATTTTTGTATACTTGTATGTTCTAATGAAGGCGAGCATATAGTCAAGAATGGTGGGGAAGAGGAATGTACTGTTTGCATGGGAAAAACAAAGAAAAAGTGCTCAACGTCAAGAACAGATTGTAAGGCATCACTTGTTGTTTCAAAAGCATGGAAGAGAAGCAAATGGATTATCAAAAGCTTTGATAATGCTCATAATCATGCCATGATCAGCCCTAAGAGTGTGAGTTATCTTCGATGTCATAAGAAAATGAGCAAAGCGGCTAAAAACCTTGTTGAGAAGTTTGATGAAGAAGGGGTGCCTACAGGAAAGGTTGCCGCTATGTTTAATGGTGGAGATATATCTTTCTCTGATAGGGATTGCTGGAATCATCTTAGAAATGTTAGAAGAAGAAATCTTGATATTGGAGATGCCCAAGCTATTTTGAACTTTTGTAAAGAAAAGCAAGCTGAAAATCCATATTTCTTCTATGCAATACAATGTGATGATGAAGATAGAATGATAAATTTTTTTTGGGTAGACGCAAGATCAAGAATGGCATATAAGAATTTTGGAGATGTCATTACATTTGATACAACATATAGGACCAACAAGTACAACATGCCTTTTGCTCCTTTTACTGGGTTGAATCATCATTGCCAATCCATATTATTTGGTTGTGCTTTATTACAAGATGAGACTGAGAAGACTTTCGAATGGCTATTTCACACTTGGCTCGAGGCAATGGGTGGAAAAAGTCCCGTGTCAATAATAACAGATCAAGATTTGGCAATGAAAGCTGCTATAGCCAAGGTACTTCCATATACTCGTCATAGATTATGCTTGTGGCACATTAGGAAAAAATTTCCTGAGAAGCTTTCACATATATACCATAAAAAATCATCTTTCAAGTGTGAATTGAAATCATGCATTCGTGATTCACCATCTATAAAGGATTTTGAAGAAGACTGGGAGCGTATAATGATTGCTTATGATTTGAAGAAGAATGAATGGCTTCAAGGCTTATACAATATAAGAGATTCATGGGTGCCTGTTTATAATAGAGGAACTTTTTTTGGTGGGATGAACACTACACAGAGGAGTGAGAGTATAAATGCTTTTTTTGATGCCTTTGTTAATTCTTCAACAACACTACGAGATTTTGTAGTGAAGTTTGACAAGGCAATGGATAGTCGCTATGAAAAAGAAAGAAGAGAAGATTTTGAGTCCAGGCATCGATCACGTCTCTTAGATATTAAATCAAAGATTGGGGAGCATGCTGCATCAATTTATACAAGAGCCATTTTTGGGAAGTTTCATGATGAACTGGCCAAGATTAATCAATTCACAAAGGAGAAGATTGAAAAGAATGGGTCTCAGTATACATACAGGGTATCCAACTGTTTTGAGTCTCGGGACACAGTTACGGTTTGTGTGGATCTTGATACAAAGGTTGCTAATTGCAGTTGCCAACTATATGAATTTTCGGGGATTTTATGTAGACATATCTTGGTTATTTTTCAAGCAAAAAATATCATTGAAATTCCAAGTAATTATATTTTAGAGCGTTGGACAAAAGACGCTAACAGGGTCATTGGATTTAATGAAAATGGAGCAACTTCTTCATGTGATGCTAATAATTCAGTAACTCTGCGAAGTATACATGTGCATAGTCAAGCTAGTTTATTATCTGATCTTGCTGCAAAATCTGAGAATTTATACATGTTCATATCATCTGAAATGGAGCAAACATACAAAAGAGCTATAGCAATGGAATCTGAAATGTGCCTTGAAAATGAGGTTTTTCCCCAAGAGGCCAGTTGTCAAAATCTGTTATGTGAACAGGTAAGTGCTTCTCCTGAATCAAATATTAGAGATCCACTCATGTCACAAACTAAAGGAAGAAAAAAAGATGCATTGAAAATGACTCAACAGGGAAGGATCAAAAGCAGTCTAGAGTTGTCAATAAATCGATCTCTAGTAAAAAGAAGATCATGTCAAGTATGTGGACAACATGGTCACAATCGACGAAGTTGTAAGCAAAAGATAAATGATGAATCTATTGATCAACCTACTTGA 2271 0.3602 MDVENTESSIAKGTKDHERIDHVSDEATIDEQPNLCPSIGMEFDSLEDVKELYTSFAKKTGFGIRTRSTKENFCILVCSNEGEHIVKNGGEEECTVCMGKTKKKCSTSRTDCKASLVVSKAWKRSKWIIKSFDNAHNHAMISPKSVSYLRCHKKMSKAAKNLVEKFDEEGVPTGKVAAMFNGGDISFSDRDCWNHLRNVRRRNLDIGDAQAILNFCKEKQAENPYFFYAIQCDDEDRMINFFWVDARSRMAYKNFGDVITFDTTYRTNKYNMPFAPFTGLNHHCQSILFGCALLQDETEKTFEWLFHTWLEAMGGKSPVSIITDQDLAMKAAIAKVLPYTRHRLCLWHIRKKFPEKLSHIYHKKSSFKCELKSCIRDSPSIKDFEEDWERIMIAYDLKKNEWLQGLYNIRDSWVPVYNRGTFFGGMNTTQRSESINAFFDAFVNSSTTLRDFVVKFDKAMDSRYEKERREDFESRHRSRLLDIKSKIGEHAASIYTRAIFGKFHDELAKINQFTKEKIEKNGSQYTYRVSNCFESRDTVTVCVDLDTKVANCSCQLYEFSGILCRHILVIFQAKNIIEIPSNYILERWTKDANRVIGFNENGATSSCDANNSVTLRSIHVHSQASLLSDLAAKSENLYMFISSEMEQTYKRAIAMESEMCLENEVFPQEASCQNLLCEQVSASPESNIRDPLMSQTKGRKKDALKMTQQGRIKSSLELSINRSLVKRRSCQVCGQHGHNRRSCKQKINDESIDQPT. 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01780 756 MobiDBLite consensus disorder prediction 686 708 - -
Seca3g01780 756 MobiDBLite consensus disorder prediction 1 22 - -
Seca3g01780 756 Pfam FAR1 DNA-binding domain 52 140 IPR004330 -
Seca3g01780 756 ProSiteProfiles Zinc finger SWIM-type profile. 539 575 IPR007527 GO:0008270
Seca3g01780 756 Pfam SWIM zinc finger 543 575 IPR007527 GO:0008270
Seca3g01780 756 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 25 650 IPR031052 GO:0006355
Seca3g01780 756 Pfam MULE transposase domain 258 352 IPR018289 -
Seca3g01780 756 ProSiteProfiles Zinc finger CCHC-type profile. 730 745 IPR001878 GO:0003676|GO:0008270
Seca3g01780 756 SMART 26again6 550 577 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01780 Seca-Chr3 31313051 31315321 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g01780 MULE 5.6e-31 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01780 - - mtr:112420114 887.1