Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01776 ATGGATAAGTACGAGGCCGTGAAGGATTTGGGAGCTGGCAATTTTGGGGTGGCCAGGCTTATGAGAAACAAGGTCACCAAGGAACTCGTCGCCATGAAATACATCGAGCGTGGCAACAAGATTGATGAGAACGTGGCAAGGGAGATTATGAACCACAGGTCCCTTCGGCATCCCAATATAATTCGTTTCAAGGAGGTGGTTTTGACTCCCACACATTTAGCAATAGTAATGGAGTATGCAGCTGGAGGAGAGCTCTTTGAGAGGATATGCAATGCTGGAAGGTTCAGTGAAGATGAGGCCAGATATTTCTTTCAGCAGTTGATATCCGGTGTCCACTTCTGTCATACCATGCAAATATGCCACAGAGATTTGAAGCTAGAAAATACCCTTTTAGATGGAAGTCCTGCACCTCGCTTAAAGATTTGTGACTTTGGTTATTCTAAGTCATCTTTGCTGCATTCACGACCCAAATCAACTGTTGGAACACCAGCTTATATAGCACCAGAGGTTCTTTCTAGGAGGGAGTATGATGGAAAGGTAACAAACATATTTGCTCCACATCAGATTGGTTCTTTGGAGTCCCTTGCATCTGATCTGTTTATATACTGGATCTTCACCTTTCTAGCCTGCTGGGCTGATGTATGGTCATGTGGGGTGACTCTTTATGTCATGCTGGTTGGAGCATATCCCTTTGAGGATCAGGATGACCCTAGGAATTTTAGGAAAACAATTCAGCGTATAATGGCTATTCAATACAAAATCCCTGATTATGTTCACATATCTCAAGATTGCAGACACCTCATTTCTTGTATATTTGTTGCAAATCCATTGAGGAGAATTACTCTTAAGGAAATTAAGAATCACCCATGGTTTTTAAAGAATCTTCCAAGGGAGTTAACTGAATCAGCTCAAGCTATCTATTATCAAAGAGACAATCCAAGCTTTCATCTTCAAGGTGTGGATGAGATAATGAAAATTGTGGGAGAGGCAAGAAACCCACCTCCAGTATCTAGGCCTGTCAAAGGTTTTGGCTGGGAAGGTGAAGGTGAAGATGATGAAGGGGCAGAAGATTTGGATGGAGAAGTGGAGGAAGAGGAAGATGAAGATGAATACGATAAGAGGGTCAAAGAGGTTCATGCAAGTGGAGAATTCAAAATTAGTTAA 1164 0.4227 MDKYEAVKDLGAGNFGVARLMRNKVTKELVAMKYIERGNKIDENVAREIMNHRSLRHPNIIRFKEVVLTPTHLAIVMEYAAGGELFERICNAGRFSEDEARYFFQQLISGVHFCHTMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKVTNIFAPHQIGSLESLASDLFIYWIFTFLACWADVWSCGVTLYVMLVGAYPFEDQDDPRNFRKTIQRIMAIQYKIPDYVHISQDCRHLISCIFVANPLRRITLKEIKNHPWFLKNLPRELTESAQAIYYQRDNPSFHLQGVDEIMKIVGEARNPPPVSRPVKGFGWEGEGEDDEGAEDLDGEVEEEEDEDEYDKRVKEVHASGEFKIS. 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01776 387 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Seca3g01776 387 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Seca3g01776 387 Pfam Protein kinase domain 4 181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01776 387 Pfam Protein kinase domain 212 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01776 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Seca3g01776 387 ProSiteProfiles Protein kinase domain profile. 4 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01776 387 PANTHER SERINE/THREONINE KINASE 3 326 - -
Seca3g01776 387 Gene3D Transferase(Phosphotransferase) domain 1 80 298 - -
Seca3g01776 387 MobiDBLite consensus disorder prediction 372 387 - -
Seca3g01776 387 SMART serkin_6 4 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01776 387 SUPERFAMILY Protein kinase-like (PK-like) 2 322 IPR011009 -
Seca3g01776 387 MobiDBLite consensus disorder prediction 334 387 - -
Seca3g01776 387 FunFam Serine/threonine-protein kinase SRK2E 1 79 - -
Seca3g01776 387 CDD STKc_SnRK2 3 290 - -
Seca3g01776 387 MobiDBLite consensus disorder prediction 349 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01776 Seca-Chr3 30898662 30902205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01776 3 294 CBL-interacting serine-threonine protein kinases AT4G24400 38.206 2.68e-58 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Seca3g01776 Pkinase 6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01776 K14498 - gmx:547811 621.313