Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01772 ATGGAGAGGAAATCACTTGGATTGTTCTTCTTCTTGCTCCTCATTGCCTTTGCTTCTCTGGTGGTGCAGACAGAGGGAAGGATGTGTGAGTCACAGAGCCACAGGTTTAAGGGTGCGTGTTTAGGAGACCACAACTGTGCCTTGGTCTGCAGGAACGAAGGTTTCTCCGGTGGCAGATGCCGAGGATTCCGCCACCGCTGCTTTTGCACCAGACTTTGTTCAACTTGA 228 0.5132 MERKSLGLFFFLLLIAFASLVVQTEGRMCESQSHRFKGACLGDHNCALVCRNEGFSGGRCRGFRHRCFCTRLCST. 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01772 75 PANTHER DEFENSIN-LIKE PROTEIN 1 6 70 - -
Seca3g01772 75 ProSitePatterns Gamma-thionins family signature. 27 50 IPR008176 GO:0006952
Seca3g01772 75 Pfam Gamma-thionin family 27 73 - -
Seca3g01772 75 SUPERFAMILY Scorpion toxin-like 27 73 IPR036574 -
Seca3g01772 75 PRINTS Purothionin signature 58 72 IPR008176 GO:0006952
Seca3g01772 75 PRINTS Purothionin signature 28 43 IPR008176 GO:0006952
Seca3g01772 75 Gene3D - 27 73 IPR036574 -
Seca3g01772 75 SMART gth_4 28 73 IPR003614 GO:0006952
Seca3g01772 75 CDD Knot1 38 70 IPR003614 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01772 Seca-Chr3 30862182 30862908 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01772 1 73 Plant Defensins Gene Families AT5G63660 57.534 1.71e-26 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01772 - - tcc:18602472 109.383