Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01771 ATGGACCACAAGGCACGATTTGGGCTTTTCTTCATGTTGCTCATTCTCCTTGCTTCTCCAGAGATGGTGGTGCAAACGGAGGGAAGGCATTGTGAGTCAAAGAGCCATCGATTTAAAGGGTTGTGCTTCAGCGATCATAACTGCGCTTCAGTTTGCCATCTTGAAGGCTTCACAGGTGGTAAATGCCGCGGTTTCCGTCAACGCTGTTTCTGCAACAAACGTTGTTAG 228 0.4825 MDHKARFGLFFMLLILLASPEMVVQTEGRHCESKSHRFKGLCFSDHNCASVCHLEGFTGGKCRGFRQRCFCNKRC. 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01771 75 PANTHER DEFENSIN-LIKE PROTEIN 1 5 72 - -
Seca3g01771 75 SMART gth_4 30 75 IPR003614 GO:0006952
Seca3g01771 75 Pfam Gamma-thionin family 29 75 - -
Seca3g01771 75 CDD Knot1 40 71 IPR003614 GO:0006952
Seca3g01771 75 Gene3D - 29 75 IPR036574 -
Seca3g01771 75 ProSitePatterns Gamma-thionins family signature. 29 52 IPR008176 GO:0006952
Seca3g01771 75 PRINTS Purothionin signature 60 74 IPR008176 GO:0006952
Seca3g01771 75 PRINTS Purothionin signature 30 45 IPR008176 GO:0006952
Seca3g01771 75 SUPERFAMILY Scorpion toxin-like 29 75 IPR036574 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01771 Seca-Chr3 30853292 30854012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01771 10 75 Plant Defensins Gene Families AT2G02130 57.576 4.16e-24 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01771 - - gmx:100788332 136.732