Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01763 ATGTCGAGTTTTCACGTGGGTGGCAAGGTGGTCGACAGAGTCGATTTGCTGAAGAAGAAGCCATGGCTGTGGCGCTTGGACGCTTGGCCTTTTGCTATTGTTTACGCCGCGTGGGTATCGGCAATTCTTCCCAGCTTGGACTTCGTTGATGCTGCTATCGTTTTGGGTGGCCTCGTTGCTCTTCACATCCTCGTTTGGCTCTTCACCGGTTGGTCCGTTGATTTCAAATGTTTTGCCCATTATAGCAAGGTTAAAAATATTCACCAAGCCGATTCTTGCAAAATAACTCCGGCTAAGTTTTCAGGTTCTAAAGAAGTCGTGCCGCTTCATTTTCGGAAATCATCTGCAGGCTCTTCATCAGCAGTGGATATGGAAGAGATTTACTTTGATTTTAGAAAACAACATTTTGTCTATTCAATGGACAAGGGGACTTTTTGTAAACTTCCTTACCCTACAAAGGAAACATTTGGATATTATCTCAAGAGTAGTGGCCATGGTTCTGAAGCTAAAGTTCTTGCTGCTACTGAGAGATGGGGGCGGAATGTATTTGATTATCCTCAGCCAACATTTCAGAAATTGATGAAAGAGCACTGCATGGAGCCTTTTTTTGTATTTCAGGTTTTCTGTGTGGGTCTCTGGTGTTTGGATGAATATTGGTATTATAGTTTGTTCACTCTGTTTATGCTCTTTATGTTTGAGTCAACCATGGCAAAAAGTCGGTTAAAGACTTTAACTGAGTTAAGACGTGTTAGAGTGGACAGTCAGATCCTAATGGTACATCGCTGTGGCAAATGGGTAAAACTCTCTGGTACAGACCTTTTGCCAGGGGATGTTGTCTCTATAGGTCGCTCTTCTGGTCAGAATGGAGAGGAGAAGTCTGTACCAGCAGACATGCTTATATTGGCTGGAAGCGCAATTGTGAATGAAGCTATTCTCACAGGCGAGTCTACTCCTCAATGGAAGATAAGACCATCCTTTCAGGTTTCTATTGCGGGTAGGGGGATTGATGAGAAGTTGTCAGCAAAGCGAGATAAAAGCCATGTTTTATTTGGTGGAACTAAAATTTTGCAGCACACTCCAGATAAGACCTTTCCCCTAAAAACACCTGATGGTGGCTGCTTGGCTGTTGTCCTGAGAACTGGATTCGAGACAAGTCAAGGGAAGTTGATGCGGACAATCTTATTCTCTACAGAAAGGGTGACTGCTAATAGCTGGGAAAGTGGATTGTTCATTTTATTCTTGGTTGTATTTGCTCTAATTGCTGCTGGTTATGTGCTTATTAAGGGGCTAGAAGACCCCTCAAGGAGCAAATATAAACTTATTCTAAGCTGTTCACTTATTGTTACTTCTGTGATACCTCCTGAGTTACCAATGGAATTATCAATAGCTGTTAATACTTCCCTGATTGCACTGGCTCGGCGAGGAATTTTTTGCACAGAACCTTTTAGAATTCCATTTGCTGGGAAGGTTGATATATGTTGTTTTGACAAGACTGGGACGCTTACATCTGATGACATGGAGTTTTCTGGAGTTGTTGGGTTGTCAGGAACTACAGATTTGGAATCTGATATGAGTAGAGTGCCTGTGCGAACAGTAGAAATTCTGGCTTCTTGCCATGCATTGGTATTTGTTGAGAATAAGCTGGTTGGTGATCCTCTCGAGAAGGCTGCCCTTAAGGGAATCGATTGGAGTTATAAATCTGATGAGAAGGCTGTTCCAAAAAAGGGAAATGGCCATCCTGTCCAAATTGTTCAGCGGTATCATTTTGCATCTCACTTAAAACGAATGGCAGTTATTGTTCGAATTCAGGAGGAATTTTTTGCCTTTGTGAAGGGTGCCCCAGAAATTATACAAGAAAGGCTCACTGATATACCAGCATCATATGTTGAGACCTACAAAAAATATACACGTCAAGGGTCTCGGGTTCTTGCTCTGGCATACAAGTCTCTCTCTGACATGACAGTCAGTGAAGCTAGAAGCTTGGATAGGGATATGGTGGAGAGTGGACTTACTTTTGCAGGTTTTGTGGTATTTAATTGTCCCATAAGATCAGATTCAGCCACTATTTTATCTGAATTGAAAGGATCTTCACACGACTTGGTGATGATTACTGGTGACCAAGCTTTGACAGCTTGTCATGTTGCTAGCCAAGTTCATATCATATCAAAACCTACACTGATCCTTGGTCCAGCAAGTAATGGTGAAGGATATAATTGGGTATCCCCTGATGAGACTGAAAACATTCGCTACAGACTGATCATAAATATAATTGGTTTCAGTGAGAAAGAGGTTGAATCTTTATCAGAAACTCATGATCTTTGTGTTGGAGGTGATTGCATTGAGATGTTGCAACAGACATCAGCTCATCTTCTAGTCATTCCTCATGTGAAGGTTTTTGCTAGAGTTGCTCCTGAGCAAAAGGAACTTATTATGACCACTTTCAAAACAGTGGGACGGGTAACTTTGATGTGTGGGGATGGAACCAATGATGTTGGAGCTTTGAAGCAGGCCGATGTAGGAGTAGCTCTTCTGAATGCAGTTCCCCCTACAAAAAGTGGAAACTCCTCTACAGATTCATCTGGGGAAGACGGTGCAAAATCTGTCAAGCAAAAGAAATCTAAGCCTGCACTGGAAACATCTGGAAAGACAGTTAGCCCAATTGGTGAAGGCACTTCAAAAGCCAAAGTTGCTTCAAAATCAGATTCCACCAGCCATTCATCTGGTAACCGTCATCAGGCAGCTGTTGAGATGCAAAAACAGAAGCTTAAGAAGATGATTGATGAGCTTAATGAGGAAGGAGATGGTCGTGCACCCATTGTCAAGCTTGGTGATGCCTCAATGGCTTCTCCATTCACTGCAAAGCATGCATCTGTTGCTCCCACCACTGATATAATTCGTCAAGGTCGAAGTACCCTAGTGACAACACTCCAGATGTTTAAAATTCTGGGCCTCAACTGCCTTGCTACTGCCTATGTGTTGAGTGTTATGTATCTGGATGGTGTCAAGCTAGGTGATATACAAGCCACAATAAGTGGTGTCTTTACTGCTGCTTTTTTCCTCTTCATATCACATGCACGCCCTCTTCCCACTCTCTCAACTGAACGCCCCCACCCTAACATCTTCTGTGCTTATGTCTTCCTTTCCCTCTTGGGACAATTTTCTATTCACTTGCTTTTTCTGATTTCATCTGTGAGAGAAGCTGAAAAACACATGCCAGATGAGTGCATTGAACCTGATTCAGATTTTCATCCTAACCTGGTAAATACTGTTTCCTACATGGTGGGCATGATGCTTCAGGTGGCCACATTTGCCGTGAACTACATGGGCCATCCCTTTAACCAGAGTATTCCTGAAAACAAACCATTCCTCTACGCACTTGCTGCTGCTGTTGGTTTCTTTACTGTGATTACATCTGATCTCTTCAGGGACTTAAATGACTGGTTGAAACTGGTGCCATTGCCAGTAGGTTTAAGGAATAAACTATTGCTTTGGGCATTTCTAACGTTTGTTGTATGCTATTCATGGGAGAGACTATTGAGGTGGGCCTTCCCTGGTAAGATTCCAGCTTGGAAGAAGCGACAAAGGGTTGCTGTATCTAATTTAGAAAAGAAGAAGCAGCTCTAA 3624 0.4269 MSSFHVGGKVVDRVDLLKKKPWLWRLDAWPFAIVYAAWVSAILPSLDFVDAAIVLGGLVALHILVWLFTGWSVDFKCFAHYSKVKNIHQADSCKITPAKFSGSKEVVPLHFRKSSAGSSSAVDMEEIYFDFRKQHFVYSMDKGTFCKLPYPTKETFGYYLKSSGHGSEAKVLAATERWGRNVFDYPQPTFQKLMKEHCMEPFFVFQVFCVGLWCLDEYWYYSLFTLFMLFMFESTMAKSRLKTLTELRRVRVDSQILMVHRCGKWVKLSGTDLLPGDVVSIGRSSGQNGEEKSVPADMLILAGSAIVNEAILTGESTPQWKIRPSFQVSIAGRGIDEKLSAKRDKSHVLFGGTKILQHTPDKTFPLKTPDGGCLAVVLRTGFETSQGKLMRTILFSTERVTANSWESGLFILFLVVFALIAAGYVLIKGLEDPSRSKYKLILSCSLIVTSVIPPELPMELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDICCFDKTGTLTSDDMEFSGVVGLSGTTDLESDMSRVPVRTVEILASCHALVFVENKLVGDPLEKAALKGIDWSYKSDEKAVPKKGNGHPVQIVQRYHFASHLKRMAVIVRIQEEFFAFVKGAPEIIQERLTDIPASYVETYKKYTRQGSRVLALAYKSLSDMTVSEARSLDRDMVESGLTFAGFVVFNCPIRSDSATILSELKGSSHDLVMITGDQALTACHVASQVHIISKPTLILGPASNGEGYNWVSPDETENIRYRLIINIIGFSEKEVESLSETHDLCVGGDCIEMLQQTSAHLLVIPHVKVFARVAPEQKELIMTTFKTVGRVTLMCGDGTNDVGALKQADVGVALLNAVPPTKSGNSSTDSSGEDGAKSVKQKKSKPALETSGKTVSPIGEGTSKAKVASKSDSTSHSSGNRHQAAVEMQKQKLKKMIDELNEEGDGRAPIVKLGDASMASPFTAKHASVAPTTDIIRQGRSTLVTTLQMFKILGLNCLATAYVLSVMYLDGVKLGDIQATISGVFTAAFFLFISHARPLPTLSTERPHPNIFCAYVFLSLLGQFSIHLLFLISSVREAEKHMPDECIEPDSDFHPNLVNTVSYMVGMMLQVATFAVNYMGHPFNQSIPENKPFLYALAAAVGFFTVITSDLFRDLNDWLKLVPLPVGLRNKLLLWAFLTFVVCYSWERLLRWAFPGKIPAWKKRQRVAVSNLEKKKQL. 1208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01763 1207 SFLD p-type atpase 475 970 IPR044492 -
Seca3g01763 1207 Gene3D - 226 394 - -
Seca3g01763 1207 PRINTS P-type cation-transporting ATPase superfamily signature 824 843 - -
Seca3g01763 1207 PRINTS P-type cation-transporting ATPase superfamily signature 308 322 - -
Seca3g01763 1207 PRINTS P-type cation-transporting ATPase superfamily signature 494 508 - -
Seca3g01763 1207 FunFam Cation-transporting ATPase 675 859 - -
Seca3g01763 1207 Gene3D - 675 856 IPR023214 -
Seca3g01763 1207 PANTHER CATION-TRANSPORTING ATPASE-RELATED 12 1183 IPR006544 GO:0006812|GO:0016020|GO:0019829|GO:0140358
Seca3g01763 1207 CDD P-type_ATPase_cation 170 1122 IPR047820 -
Seca3g01763 1207 MobiDBLite consensus disorder prediction 846 915 - -
Seca3g01763 1207 Pfam Cation transport ATPase (P-type) 545 623 - -
Seca3g01763 1207 MobiDBLite consensus disorder prediction 895 914 - -
Seca3g01763 1207 SUPERFAMILY Calcium ATPase, transduction domain A 255 393 IPR008250 -
Seca3g01763 1207 MobiDBLite consensus disorder prediction 848 863 - -
Seca3g01763 1207 NCBIfam HAD-IC family P-type ATPase 409 515 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g01763 1207 NCBIfam HAD-IC family P-type ATPase 795 843 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g01763 1207 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 500 684 IPR023299 GO:0000166
Seca3g01763 1207 FunFam Cation-transporting ATPase 490 674 - -
Seca3g01763 1207 NCBIfam P-type ATPase of unknown pump specificity (type V) 44 1164 IPR006544 GO:0006812|GO:0016020|GO:0019829|GO:0140358
Seca3g01763 1207 SUPERFAMILY Calcium ATPase, transmembrane domain M 167 1184 IPR023298 -
Seca3g01763 1207 FunFam Cation-transporting ATPase 226 394 - -
Seca3g01763 1207 Gene3D - 490 674 IPR023299 GO:0000166
Seca3g01763 1207 Coils Coil 912 932 - -
Seca3g01763 1207 ProSitePatterns Hypothetical cof family signature 2. 824 846 - -
Seca3g01763 1207 SFLD Haloacid Dehalogenase 475 970 - -
Seca3g01763 1207 ProSitePatterns E1-E2 ATPases phosphorylation site. 496 502 IPR018303 -
Seca3g01763 1207 Pfam E1-E2 ATPase 258 474 - -
Seca3g01763 1207 SUPERFAMILY HAD-like 489 851 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01763 Seca-Chr3 30691723 30707002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01763 1 1207 Primary Pumps ATPases AT5G23630 76.694 0.0 1913
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01763 K14950 - gmx:100789385 2185.22