Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01761 ATGGAACAGTGGGGTGTTCATCGTCAAGCAATGTTCATTGGCCAGCATGAGGAAGATGGGAGTCAACTTCCTTCTGATATTTATAAGGAAGAGGACTCAAATGATGAAGAAGAGATAAATATTAAAACTGAACCTGTCTTTCTTCCGGAAATTAAGAAAAGGAAGCGCCTTAGCCTTAGTCAGCTTAGAGAGGTGAAAGAGGAGTCATGTGGGAGGCAAAGCAGTAGCAAGCAAAAGACAAAGAAGCATGAAAGTAGGGACAGGTGGTCAGCTGAGAGGTATAAGTTGGCTGAGAAAAACATGTGGGAGGTGTTAAAGGCAGAAGGTGCGACTTTTGAGAACCCAATAACCCGACCTGCACTAAGATTGGCTGCTCGTAAACACATCGGTGATACTGGACTTTTAGACCACTTACTAAAACACATTGATGGTAAAGTGGCACCTGGAGGGACTGAGAGGTTCCGAAGATGGTTCAACACCAATGGAATCATGGAGTATTGGTTGGAGAGTGCTGAATTGGACAAGGTCCGCCAGGACGCAGGGGTGCAGGACCCTTACTGGATACCACCATCTACTTTTAGGGCAGGCAGTGCCTCCTGTCAGAACACTGATTCTTCTGGTGAATTGAAACTGCTTAAAATAGAAATGGCCAAAATGAAGAATTTGCATAGCAGAGATATGCAGGAGCTCATTGCCAAGAACCAACAGAAAAGTGAAATTAGTATGATGGAGGAGAGTCACAAGGAATTTGTGAAATGGAAAGCTATGACTGACCACCACCTAACTGAAATCATGACTTCATTGAAGGGTGTGCAGGGAAAGTATGGTGAATTGGTGATCTGGAAAACTAAAGTTGAGCAACAGCTTGTGGAAATAACAAATAAATTGAATGATCTCCAAGCATCAAGGGAATGCACCACTTTCAGTCCTCCTTCAGAAAGATGGAAAGATTGGATAGAAGGTACTAACCTAGAAAATATTCAAGAGGATGCATTTGCAACTTGGATCGGGAGTTCAGAACTACTTAATGTCCCACAAGAGGTTGTACTTGAAGTTCCCAACACAGCCATACCAACCCAGCCACTCAATGAAGAACTGACAAATAAGAAGAGTGATGTGCTGGAGTTGGTGCCGATAAGGCAAGAAGATCAACCTAATGTAACCCCTGATTCTTCTACAACTGTTAATTCGAAGTCAGACCTTGACAACTCATTGATGATGTTTCAGGAAATGTTTATGGATTTATTCAAATGGAAAGAAAGAATTGAGCAGCAGCTATTGGAGGTATCAAACACTGTATATGGTATGCTGGCAATGAAGTAG 1323 0.4255 MEQWGVHRQAMFIGQHEEDGSQLPSDIYKEEDSNDEEEINIKTEPVFLPEIKKRKRLSLSQLREVKEESCGRQSSSKQKTKKHESRDRWSAERYKLAEKNMWEVLKAEGATFENPITRPALRLAARKHIGDTGLLDHLLKHIDGKVAPGGTERFRRWFNTNGIMEYWLESAELDKVRQDAGVQDPYWIPPSTFRAGSASCQNTDSSGELKLLKIEMAKMKNLHSRDMQELIAKNQQKSEISMMEESHKEFVKWKAMTDHHLTEIMTSLKGVQGKYGELVIWKTKVEQQLVEITNKLNDLQASRECTTFSPPSERWKDWIEGTNLENIQEDAFATWIGSSELLNVPQEVVLEVPNTAIPTQPLNEELTNKKSDVLELVPIRQEDQPNVTPDSSTTVNSKSDLDNSLMMFQEMFMDLFKWKERIEQQLLEVSNTVYGMLAMK. 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01761 440 MobiDBLite consensus disorder prediction 62 88 - -
Seca3g01761 440 Coils Coil 282 302 - -
Seca3g01761 440 MobiDBLite consensus disorder prediction 1 42 - -
Seca3g01761 440 PANTHER PROTEIN DYAD 1 438 IPR044221 GO:0007131|GO:0051177|GO:0051321
Seca3g01761 440 MobiDBLite consensus disorder prediction 22 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01761 Seca-Chr3 30678800 30682981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01761 88 169 PHD Transcription Factor Family AT5G22260 40.964 4.71e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01761 - - gmx:100806484 726.472