Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01730 ATGGATCCGGACGCGTTCACCGCCAGCCTATTCAAGTGGGACCCGCGCACCGTCCTTCCACCTCCCGCGGCCACACGTCCCCCTCTCCTCGACTACGCGGTTGCTCCGCCAGTGGCCGCGACGGCGGCGTATCATCCGGCGAGAGCGCCGAGGGAGTTGGAGGAACTGTTCCAAGCTTACGGCATCAGATACTACACGGCGGCGAAGATATCGGAGCTTGGTTTCACGGCGAGCACGCTGGTGGACATGAAGGACGAGGAGTTAGACGAAATGATGAACAGCCTCTCCCAGATTTTCCGATGGGATCTCCTTGTCGGCGAGCGTTACGGCATCAAAGCCGCCGTCAGAGCCGAACGAAGACGCGTCGACGACGAGGACATGAAGCGCCGCAACCTCCTCTCCACCGACACAACCACCAACGCACTCGATGCTCTCTCTCAAGAAGGTTTGTCGGAGGAGCCGGTGGTGCAACGAGAAAGGGAGGTAGTTGGAAGCGGGGGAGGGAGCACGTGGGAGGTAGTTGCGGCGGAGGAGAGGAGGAAGCAGCAGCAGATGAGGAGGAGGAGGGCAAGGATGAAGAGGAATGCTGAGGAGAATGAAGAAGTGGAAGAGGAGGAAGGAGAAGAGAATGATGAAGGAAACAACAACAGTGGTGGTGGTGGTTGTGAGAGGCAAAGAGAGCATCCATTCATAGTGACTGAGCCTGGGGAGGTTGCACGTGGCAAGAAGAATGGTCTTGACTATCTCTTTCATCTCTACGAGCAATGCCGTGAGTTCTTGATCCAGGTTCAGGCCATCGCCAAGGACCGCGGTGAAAAATGCCCAACCAAGGTGACAAATCAGGTATTTAGGTACGCGAAGAAAGCTGGAGCTAGCTACATCAACAAGCCGAAAATGCGACACTACGTGCATTGCTACGCGTTGCATTGTCTTGACGAGGAGGTGTCGAATGAGCTGAGAAGGGGTTTCAAGGAGAGAGGGGAGAATGTAGGAGCATGGAGGCAAGCTTGTTACAAGCCCCTTGTGGCCATAGCAGCACGTCAAGGTTGGGACATTGATGCCATTTTCAATGCGCATCCTCGTCTTTCCATATGGTATGTGCCAACAAAGCTCCGTCAACTTTGTCATGCCGAGAGGAACAGCGCCGCCGCTTCTAGCTCCGTCTCTGTTGGCAGCGGCCACCTTCCCTTCTAA 1194 0.5578 MDPDAFTASLFKWDPRTVLPPPAATRPPLLDYAVAPPVAATAAYHPARAPRELEELFQAYGIRYYTAAKISELGFTASTLVDMKDEELDEMMNSLSQIFRWDLLVGERYGIKAAVRAERRRVDDEDMKRRNLLSTDTTTNALDALSQEGLSEEPVVQREREVVGSGGGSTWEVVAAEERRKQQQMRRRRARMKRNAEENEEVEEEEGEENDEGNNNSGGGGCERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQAIAKDRGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEVSNELRRGFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPRLSIWYVPTKLRQLCHAERNSAAASSSVSVGSGHLPF. 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01730 397 PANTHER PROTEIN LEAFY 1 396 IPR002910 GO:0003677|GO:0006355
Seca3g01730 397 Pfam Floricaula / Leafy protein SAM domain 50 126 IPR035079 -
Seca3g01730 397 Gene3D Protein LEAFY 220 389 IPR038276 -
Seca3g01730 397 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 217 383 IPR035209 GO:0003677
Seca3g01730 397 Coils Coil 173 212 - -
Seca3g01730 397 MobiDBLite consensus disorder prediction 138 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01730 Seca-Chr3 30086169 30088693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01730 1 392 Orphan Transcription Factor Family AT5G61850 64.706 1.25e-161 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LFY Seca3g01730 C_LFY_FLO 2.6e-109 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01730 - - gsj:114416001 600.512