Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01728 ATGGATAGAAGGACATATTCTTCAGAAGAAGCGCAACAAGAAGAGGAAATTTTGTTCCCAATATATTCTGAAAGGTCTCAGCAAGACATGTCAGCTATGGTCTCAGCCCTTACACAAGTCATTGGTGGAACCAACAATAACCCACTTCAGCTGCATGAACATCATTCAACTGCTTCCCATTCCAGCTCAACTCAGAATGAACAATCCCAAGCACCACAGCAAGATCAAGGGAGTGTTAGAAGAAGACACTATAGAGGAGTGAGGCAGCGACCATGGGGGAAGTGGGCTGCAGAGATTCGTGATCCAAAGAAGGCAGCAAGGGTATGGCTTGGGACTTTTGAAACTGCTGAAGCTGCTGCTCTTGCCTATGATGAAGCTGCTCTTAGATTCAAAGGAAGCAAAGCAAAGCTCAATTTTCCTGAAAGGGTTCAAGGCACAGCTGAATATGGCTACCTCACTAATGATCATCAACAACAACCAATATCTAACCCGGTTCCCGTTGGTTTCCATCCACACTATTCTCAAGAAACGTATTCAACAAGCCATCCCTTTCAATATGCACAAGTTCCTGGTGGTGGGAGTGGCAACTTCAATAATGAAGATATGCTTCGTTTCTATGGGAGAGATGACATGTTTGTTTCTTCTTCTTCATCATCATCTTCTCAACTATCTGATCAGCAGCAACAAGAGCTTTTGAGATTTTCGATGCAATTTGGAGGTTCTTCTTCTTCTTCTGAGCCACCTAGGAATTGGAGGGGATGA 762 0.4383 MDRRTYSSEEAQQEEEILFPIYSERSQQDMSAMVSALTQVIGGTNNNPLQLHEHHSTASHSSSTQNEQSQAPQQDQGSVRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEAAALAYDEAALRFKGSKAKLNFPERVQGTAEYGYLTNDHQQQPISNPVPVGFHPHYSQETYSTSHPFQYAQVPGGGSGNFNNEDMLRFYGRDDMFVSSSSSSSSQLSDQQQQELLRFSMQFGGSSSSSEPPRNWRG. 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01728 253 PANTHER DNA-BINDING DOMAIN 48 220 IPR044808 GO:0003700|GO:0009873
Seca3g01728 253 SMART rav1_2 83 146 IPR001471 GO:0003700|GO:0006355
Seca3g01728 253 MobiDBLite consensus disorder prediction 42 87 - -
Seca3g01728 253 MobiDBLite consensus disorder prediction 213 253 - -
Seca3g01728 253 Pfam AP2 domain 83 132 IPR001471 GO:0003700|GO:0006355
Seca3g01728 253 FunFam Ethylene-responsive transcription factor 2 82 141 - -
Seca3g01728 253 PRINTS Ethylene responsive element binding protein signature 106 122 IPR001471 GO:0003700|GO:0006355
Seca3g01728 253 PRINTS Ethylene responsive element binding protein signature 84 95 IPR001471 GO:0003700|GO:0006355
Seca3g01728 253 ProSiteProfiles AP2/ERF domain profile. 83 140 IPR001471 GO:0003700|GO:0006355
Seca3g01728 253 MobiDBLite consensus disorder prediction 42 77 - -
Seca3g01728 253 CDD AP2 83 141 IPR001471 GO:0003700|GO:0006355
Seca3g01728 253 Gene3D AP2/ERF domain 82 142 IPR036955 GO:0003700|GO:0006355
Seca3g01728 253 SUPERFAMILY DNA-binding domain 83 141 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01728 Seca-Chr3 29968189 29970238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01728 18 164 AP2-EREBP Transcription Factor Family AT5G61890 61.438 1.24e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca3g01728 AP2 2.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01728 - - gmx:100787091 280.411